Amplicon details |
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Amplicon: |
615 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa 101 ggggcaatcc tgagccaaat ccatgttttg agaaaacaag cggttctcga 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa 251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg 301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa 351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa 401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa 451 atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga 501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga 551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca 601 agtccctcta tcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| HG996681.1 | nt | Oryza sativa genome assembly, organ... | 134498 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG996684.1 | nt | Oryza sativa genome assembly, organ... | 134503 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG996690.1 | nt | Oryza sativa genome assembly, organ... | 134495 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG996735.1 | nt | Oryza sativa genome assembly, organ... | 134502 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG996742.1 | nt | Oryza sativa genome assembly, organ... | 134551 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG996751.1 | nt | Oryza sativa genome assembly, organ... | 134503 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG997785.1 | nt | Oryza sativa genome assembly, organ... | 134557 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| MT712789.1 | nt | Oryza nivara chloroplast, complete ... | 134502 bp | Oryza nivara | QL-PLN-00-007 | 615 bp | View |
| NRN_GX941094 | nrnl1 | Sequence 37002 from patent US 7868149. | 7553 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| NRN_GX932470 | nrnl1 | Sequence 28378 from patent US 7868149. | 1231 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| NRN_GX933219 | nrnl1 | Sequence 29127 from patent US 7868149. | 7604 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| NRN_GX922499 | nrnl1 | Sequence 18407 from patent US 7868149. | 16684 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| NRN_GX934230 | nrnl1 | Sequence 30138 from patent US 7868149. | 47474 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| NRN_GX926227 | nrnl1 | Sequence 22135 from patent US 7868149. | 67934 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| NRN_GX931306 | nrnl1 | Sequence 27214 from patent US 7868149. | 13945 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| NRN_GX917680 | nrnl1 | Sequence 13588 from patent US 7868149. | 8037 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| AP003280.2 | nt | Oryza sativa Japonica Group genomic... | 147201 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| AC074232.11 | nt | Oryza sativa chromosome 10 BAC OSJN... | 116932 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| AY522330.1 | nt | Oryza sativa Japonica Group cultiva... | 134551 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| OV049798.1 | nt | Oryza rufipogon genome assembly, or... | 134506 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.