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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 615 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa
101   ggggcaatcc tgagccaaat ccatgttttg agaaaacaag cggttctcga
151   actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201   ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa
251   attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg
301   catagcaaac gattaatcac agaactcata tcataatata ggttctttaa
351   ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa
401   tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa
451   atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga
501   cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga
551   aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca
601   agtccctcta tcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
HG998569.1 nt Oryza rufipogon genome assembly, or... 134595 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998570.1 nt Oryza rufipogon genome assembly, or... 134516 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG996521.1 nt Oryza sativa genome assembly, organ... 134533 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996570.1 nt Oryza sativa genome assembly, organ... 134534 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996572.1 nt Oryza sativa genome assembly, organ... 134565 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996580.1 nt Oryza sativa genome assembly, organ... 134504 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996587.1 nt Oryza sativa genome assembly, organ... 134498 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996590.1 nt Oryza sativa genome assembly, organ... 134551 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996592.1 nt Oryza sativa genome assembly, organ... 134542 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996593.1 nt Oryza sativa genome assembly, organ... 134545 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996595.1 nt Oryza sativa genome assembly, organ... 134550 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996596.1 nt Oryza sativa genome assembly, organ... 134498 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996599.1 nt Oryza sativa genome assembly, organ... 134498 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996601.1 nt Oryza sativa genome assembly, organ... 134501 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996604.1 nt Oryza sativa genome assembly, organ... 134553 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996606.1 nt Oryza sativa genome assembly, organ... 134486 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996607.1 nt Oryza sativa genome assembly, organ... 134555 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996620.1 nt Oryza sativa genome assembly, organ... 134497 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996624.1 nt Oryza sativa genome assembly, organ... 134536 bp Oryza sativa QL-PLN-00-007 615 bp View
HG996649.1 nt Oryza sativa genome assembly, organ... 134504 bp Oryza sativa QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.