Amplicon details |
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Amplicon: |
615 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa 101 ggggcaatcc tgagccaaat ccatgttttg agaaaacaag cggttctcga 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa 251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg 301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa 351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa 401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa 451 atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga 501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga 551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca 601 agtccctcta tcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| HG998509.1 | nt | Oryza rufipogon genome assembly, or... | 134540 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998510.1 | nt | Oryza rufipogon genome assembly, or... | 134537 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998511.1 | nt | Oryza meridionalis genome assembly,... | 134552 bp | Oryza meridionalis | QL-PLN-00-007 | 615 bp | View |
| HG998512.1 | nt | Oryza rufipogon genome assembly, or... | 134550 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998513.1 | nt | Oryza rufipogon genome assembly, or... | 134500 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998514.1 | nt | Oryza rufipogon genome assembly, or... | 134541 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998515.1 | nt | Oryza rufipogon genome assembly, or... | 134514 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998516.1 | nt | Oryza rufipogon genome assembly, or... | 134539 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998517.1 | nt | Oryza rufipogon genome assembly, or... | 134515 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998518.1 | nt | Oryza rufipogon genome assembly, or... | 134541 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998519.1 | nt | Oryza rufipogon genome assembly, or... | 134516 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998520.1 | nt | Oryza rufipogon genome assembly, or... | 134541 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998521.1 | nt | Oryza rufipogon genome assembly, or... | 134515 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998522.1 | nt | Oryza rufipogon genome assembly, or... | 134536 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998523.1 | nt | Oryza rufipogon genome assembly, or... | 134583 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998524.1 | nt | Oryza rufipogon genome assembly, or... | 134494 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998525.1 | nt | Oryza meridionalis genome assembly,... | 134548 bp | Oryza meridionalis | QL-PLN-00-007 | 615 bp | View |
| HG998526.1 | nt | Oryza rufipogon genome assembly, or... | 134511 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG998527.1 | nt | Oryza rufipogon genome assembly, or... | 134495 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| HG996754.1 | nt | Oryza sativa genome assembly, organ... | 134551 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.