Amplicon details

Amplicon:

571 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa acaaaggttc
151   agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201   gagttaaatg cgttgataga ggactcttta catcgaaact tcagaaagaa
251   aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactata
301   tcaaatgatt aatgacgacc cgaatccgta ttttttctat aaaaaataga
351   agaattggtg tgaatccatt ctacattgaa gaaaaaatcg aatattcatt
401   gatcaaatca ttcactccat agtctgatag atcttttgaa gaactgatta
451   atcggacgag aataaagata gagtcccgtt ctacatgtca ataccggcaa
501   caatgaaatt tatagtaaaa ggaaaatccg tcgactttaa aaatcgtgag
551   ggttcaagtc cctctatccc c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ812106.1 nt Solanum glabratum voucher Bohs 2906... 1824 bp Solanum glabratum QL-PLN-00-007 571 bp View
KU719763.1 nt Solanum glabratum voucher Miyazaki ... 1562 bp Solanum glabratum QL-PLN-00-007 571 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.