Amplicon details

Amplicon:

576 bp
1     cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51    acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151   agaatcaata acagaaaaag gataggtgca gagactcaac ggaagctgtt
201   ctaacaaata gagttgactg cattggtagg ggaattcttt ccttctaccc
251   aaacgacaga aaggatgacc ttgtatacgt acgtatacat actgaaacat
301   caaacgatta atcacgactc gaatcagtat ttttttatat gaaaaatttc
351   agaatagaag gattgtgaat tgattccgag ttgaaggaag aatcgaatat
401   tcagagatca aatcattcat tcccgagtct aatagatctt ttgaagaact
451   gattaatcgg acgagaataa agatagagtc ccattctaca tgtcaataca
501   gacaacaatg aaatttatag taagaggaaa atccgtcgac tttaaaaatc
551   gtgagggttc aagtccctct atcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ018179.1 nt Cremastosperma yamayakatense tRNA-L... 963 bp Cremastosperma yamayakatense QL-PLN-00-007 576 bp View
DQ018182.1 nt Cremastosperma sp. Smith 1577 tRNA-... 963 bp Cremastosperma sp. Smith 1577 QL-PLN-00-007 576 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.