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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 570 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt
151   cagaaagtga aaaaaggata ggtgcagaga ctcaacggaa gctgttctaa
201   caaatggagt tggctgcgtt agtagagaaa tctttccatc taaaattccg
251   aaaggataaa gtgaaggata aacgtatata cgtattgaat actatattaa
301   atgattaatg acgactcaac tgaatctgta ttttttatat aaaaatggaa
351   gaattggtgt gaatagattc cacattgaag aaagaatcga atattcattg
401   atcaaatgat tcactccata gtctgataga tcttttcaag aattgattaa
451   tcggacgaga ataaagatag agtcccgttc tacatgtcaa tgtcggcaac
501   aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551   gttcaagtcc ctctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815448.1 nt Coffea betamponensis voucher Razafi... 1707 bp Coffea betamponensis QL-PLN-00-007 570 bp View
MK342634.1 nt Coffea arabica isolate CH3 chloropl... 155191 bp Coffea arabica QL-PLN-00-007 570 bp View
MK353209.1 nt Coffea arabica isolate HP1 chloropl... 155191 bp Coffea arabica QL-PLN-00-007 570 bp View
MK353212.1 nt Coffea arabica isolate IN1 chloropl... 155277 bp Coffea arabica QL-PLN-00-007 570 bp View
MK862266.1 nt Coffea arabica isolate TY1 chloropl... 155187 bp Coffea arabica QL-PLN-00-007 570 bp View
MK875244.1 nt Coffea arabica isolate TY1 chloropl... 155189 bp Coffea arabica QL-PLN-00-007 570 bp View
MN894550.1 nt Coffea arabica isolate CH1 chloropl... 155189 bp Coffea arabica QL-PLN-00-007 570 bp View
MN894551.1 nt Coffea arabica isolate CH2 chloropl... 155189 bp Coffea arabica QL-PLN-00-007 570 bp View
KJ815419.1 nt Coffea buxifolia voucher Razafimand... 1662 bp Coffea buxifolia QL-PLN-00-007 570 bp View
KJ815434.1 nt Coffea millotii voucher Kainulainen... 1666 bp Coffea millotii QL-PLN-00-007 570 bp View
KJ815444.1 nt Coffea richardii voucher Razafimand... 1686 bp Coffea richardii QL-PLN-00-007 570 bp View
MN894552.1 nt Coffea arabica isolate CM chloropla... 155189 bp Coffea arabica QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.