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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 570 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt
151   cagaaagtga aaaaaggata ggtgcagaga ctcaacggaa gctgttctaa
201   caaatggagt tggctgcgtt agtagagaaa tctttccatc taaaattccg
251   aaaggataaa gtgaaggata aacgtatata cgtattgaat actatattaa
301   atgattaatg acgactcaac tgaatctgta ttttttatat aaaaatggaa
351   gaattggtgt gaatagattc cacattgaag aaagaatcga atattcattg
401   atcaaatgat tcactccata gtctgataga tcttttcaag aattgattaa
451   tcggacgaga ataaagatag agtcccgttc tacatgtcaa tgtcggcaac
501   aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551   gttcaagtcc ctctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ946704.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946705.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946706.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946712.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946713.1 nt Coffea arabica plastid, complete ge... 155124 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946714.1 nt Coffea arabica plastid, complete ge... 155132 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946715.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946716.1 nt Coffea arabica x Coffea canephora p... 155188 bp Coffea arabica x Coffea canephora QL-PLN-00-007 570 bp View
OQ946717.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946719.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
OQ946724.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
KY085909.1 nt Coffea arabica plastid, complete ge... 155188 bp Coffea arabica QL-PLN-00-007 570 bp View
KJ815418.1 nt Coffea boiviniana voucher Bremer et... 1670 bp Coffea boiviniana QL-PLN-00-007 570 bp View
KJ815421.1 nt Coffea commersoniana voucher Kainul... 1663 bp Coffea commersoniana QL-PLN-00-007 570 bp View
KJ815423.1 nt Coffea grevei voucher Kainulainen e... 1604 bp Coffea grevei QL-PLN-00-007 570 bp View
KJ815425.1 nt Coffea humblotiana voucher Mouly 71... 1641 bp Coffea humblotiana QL-PLN-00-007 570 bp View
KJ815432.1 nt Coffea mcphersonii voucher Bremer e... 1182 bp Coffea mcphersonii QL-PLN-00-007 570 bp View
KJ815442.1 nt Coffea resinosa voucher Kainulainen... 1606 bp Coffea resinosa QL-PLN-00-007 570 bp View
KJ815445.1 nt Coffea sambavensis voucher Rabevohi... 1707 bp Coffea sambavensis QL-PLN-00-007 570 bp View
KJ815447.1 nt Coffea tricalysioides voucher Breme... 1707 bp Coffea tricalysioides QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.