European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 552 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301   actgaatctg tattttttat atgaaaatgg aagaattggt gtgaatagat
351   tccacattga agaaagaatc gaatattcat tgattaaatg attcactcca
401   tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451   agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaag
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ620138.1 nt Keetia zanzibarica chloroplast trnT... 1559 bp Keetia zanzibarica QL-PLN-00-007 552 bp View
AJ620145.1 nt Keetia venosa chloroplast trnT-trnL... 1564 bp Keetia venosa QL-PLN-00-007 552 bp View
EF205633.1 nt Psydrax dicoccos trnT-trnL intergen... 1652 bp Psydrax dicoccos QL-PLN-00-007 552 bp View
FN386324.1 nt Keetia hispida trnT-trnL IGS(partia... 1527 bp Keetia hispida QL-PLN-00-007 552 bp View
JQ958211.1 nt Keetia gueinzii voucher Lemaire & V... 1515 bp Keetia gueinzii QL-PLN-00-007 552 bp View
JQ958212.1 nt Keetia venosa voucher Dessein et al... 1530 bp Keetia venosa QL-PLN-00-007 552 bp View
JQ958214.1 nt Psydrax kraussioides voucher Dessei... 1639 bp Psydrax kraussioides QL-PLN-00-007 552 bp View
JQ958218.1 nt Psydrax parviflora voucher Dessein ... 1664 bp Psydrax parviflora QL-PLN-00-007 552 bp View
KF488283.1 nt Keetia gueinzii voucher Verstraete ... 1508 bp Keetia gueinzii QL-PLN-00-007 552 bp View
KF488284.1 nt Keetia venosa voucher Verstraete & ... 1526 bp Keetia venosa QL-PLN-00-007 552 bp View
KF488286.1 nt Keetia venosa voucher Verstraete & ... 1506 bp Keetia venosa QL-PLN-00-007 552 bp View
KF488288.1 nt Keetia zanzibarica voucher Verstrae... 1508 bp Keetia zanzibarica QL-PLN-00-007 552 bp View
AJ620160.1 nt Psydrax nitidum chloroplast trnT-tr... 1664 bp Psydrax nitida QL-PLN-00-007 552 bp View
KF488287.1 nt Keetia zanzibarica voucher Verstrae... 1535 bp Keetia zanzibarica QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.