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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 552 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301   actgaatctg tattttttat atgaaaatgg aagaattggt gtgaatagat
351   tccacattga agaaagaatc gaatattcat tgattaaatg attcactcca
401   tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451   agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaat
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ620131.1 nt Canthium pseudosetiflorum chloropla... 1735 bp Bullockia pseudosetiflora QL-PLN-00-007 552 bp View
AJ620169.1 nt Pyrostria phyllantoidea chloroplast... 1733 bp Pyrostria phyllanthoidea QL-PLN-00-007 552 bp View
AJ620176.1 nt Scyphochlamys revoluta chloroplast ... 1735 bp Pyrostria revoluta QL-PLN-00-007 552 bp View
EF205635.1 nt Pyrostria anjouanensis trnT-trnL in... 1679 bp Pyrostria anjouanensis QL-PLN-00-007 552 bp View
FN386321.1 nt Canthium carinatum trnT-trnL IGS(pa... 1377 bp Peponidium carinatum QL-PLN-00-007 552 bp View
FN386322.1 nt Peponidium cystiporon trnT-trnL IGS... 1673 bp Peponidium cystiporon QL-PLN-00-007 552 bp View
FN386331.1 nt Peponidium sp. Karehed et al. 204 t... 1654 bp Peponidium sp. Karehed et al. 204 QL-PLN-00-007 552 bp View
FN386332.1 nt Peponidium sp. Karehed et al. 304 t... 1673 bp Peponidium sp. Karehed et al. 304 QL-PLN-00-007 552 bp View
FN386342.1 nt Pyrostria anjouanensis trnT-trnL IG... 1676 bp Pyrostria anjouanensis QL-PLN-00-007 552 bp View
FN386343.1 nt Pyrostria ixorifolia trnT-trnL IGS(... 1562 bp Pyrostria ixorifolia QL-PLN-00-007 552 bp View
FN386344.1 nt Pyrostria major trnT-trnL IGS(parti... 1671 bp Pyrostria major QL-PLN-00-007 552 bp View
FN386345.1 nt Pyrostria media trnT-trnL IGS(parti... 1666 bp Pyrostria media QL-PLN-00-007 552 bp View
FN386347.1 nt Pyrostria orbicularis trnT-trnL IGS... 1568 bp Pyrostria orbicularis QL-PLN-00-007 552 bp View
FN386349.1 nt Pyrostria richardiae trnT-trnL IGS(... 1669 bp Pyrostria richardiae QL-PLN-00-007 552 bp View
FN386351.1 nt Pyrostria sp Rabenantoandro et al. ... 1666 bp Pyrostria sp. 1 Rabenantoandro et al. 770 QL-PLN-00-007 552 bp View
FN386352.1 nt Pyrostria sp Eriksson et al. 947 tr... 1655 bp Pyrostria sp. 3 Eriksson et al. 947 QL-PLN-00-007 552 bp View
FN386353.1 nt Pyrostria sp Mouly 600 trnT-trnL IG... 1665 bp Pyrostria sp. Mouly 600 QL-PLN-00-007 552 bp View
FN386355.1 nt Pyrostria viburnoides trnT-trnL IGS... 1651 bp Pyrostria viburnoides QL-PLN-00-007 552 bp View
JQ958222.1 nt Bullockia pseudosetiflora voucher B... 1699 bp Bullockia pseudosetiflora QL-PLN-00-007 552 bp View
JQ958223.1 nt Bullockia setiflora voucher Lemaire... 1708 bp Bullockia setiflora QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.