JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

552 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag ggataggtgc agagactcga tggaagttgt tctaacaaat
201   ggagttggct gcgttagtaa agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301   actgaatccg tattttttat atgaaaacgg aagaattggt gtgaatagat
351   tccacattga agaaagaatc gaatattcat tgattaaatg attcactcca
401   tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451   agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaag
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
AJ620129.1	nt	Canthium oligocarpum chloroplast tr...	1724 bp	Canthium oligocarpum	QL-PLN-00-007	552 bp	View
JQ958253.1	nt	Vangueriella nigricans voucher Dess...	1697 bp	Vangueriella nigricans	QL-PLN-00-007	552 bp	View
JQ958256.1	nt	Vangueriella discolor voucher Jongk...	860 bp	Vangueriella discolor	QL-PLN-00-007	552 bp	View
JQ958257.1	nt	Vangueriella rufa voucher Lachenaud...	1679 bp	Vangueriella rufa	QL-PLN-00-007	552 bp	View
JQ958271.1	nt	Cuviera angolensis subsp. BV-2013 v...	1696 bp	Cuviera angolensis subsp. latior	QL-PLN-00-007	552 bp	View
JQ958275.1	nt	Cuviera subuliflora voucher Dessein...	1698 bp	Cuviera subuliflora	QL-PLN-00-007	552 bp	View
AJ620134.1	nt	Cuviera angolensis chloroplast trnT...	1725 bp	Cuviera angolensis	QL-PLN-00-007	552 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.