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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 565 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggtacagaa
151   agtgaaaagg ggataggtgc agagactcaa cggaagttgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaagtgaa agataaaggt atatacgtat tgaatactat atcaaatgat
301   taatgacgac tcgactgaat ctgtattttt tatatgaaaa cggaagaatt
351   ggtgtgaata gattccacat taaagaaaga atcgaatatt cattgattaa
401   atgattcact ccatagtctg atagatcttt tcaagaattg attaatcgga
451   cgagaataaa gatagagccc cgttctacat gtcaatgtcg gcaacaatga
501   aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551   agtccctcta tcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
HG970779.1 nt Ixora philippinensis chloroplast tr... 1658 bp Ixora philippinensis QL-PLN-00-007 565 bp View
HG970780.1 nt Ixora philippinensis chloroplast tr... 1694 bp Ixora philippinensis QL-PLN-00-007 565 bp View
HG970784.1 nt Ixora salicifolia chloroplast trnT-... 1683 bp Ixora salicifolia QL-PLN-00-007 565 bp View
HG970785.1 nt Ixora salicifolia chloroplast trnT-... 1648 bp Ixora salicifolia QL-PLN-00-007 565 bp View
HG970786.1 nt Ixora salicifolia chloroplast trnT-... 1666 bp Ixora salicifolia QL-PLN-00-007 565 bp View
HG970788.1 nt Ixora sp. Alejandro 11-068 chloropl... 1698 bp Ixora sp. Alejandro 11-068 QL-PLN-00-007 565 bp View
HG970791.1 nt Ixora sp. Chavez 13-336 chloroplast... 1732 bp Ixora sp. Chavez 13-336 QL-PLN-00-007 565 bp View
FJ150600.1 nt Ixora sp. Larsen et al. 86KL14 vouc... 1607 bp Ixora sp. Larsen et al. 86KL14 QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.