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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 565 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggtacagaa
151   agtgaaaagg ggataggtgc agagactcaa cggaagttgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaagtgaa agataaaggt atatacgtat tgaatactat atcaaatgat
301   taatgacgac tcgactgaat ctgtattttt tatatgaaaa cggaagaatt
351   ggtgtgaata gattccacat taaagaaaga atcgaatatt cattgattaa
401   atgattcact ccatagtctg atagatcttt tcaagaattg attaatcgga
451   cgagaataaa gatagagccc cgttctacat gtcaatgtcg gcaacaatga
501   aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551   agtccctcta tcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ620117.1 nt Ixora coccinea chloroplast trnT-trn... 1710 bp Ixora coccinea QL-PLN-00-007 565 bp View
HG970761.1 nt Ixora bibracteata chloroplast trnT-... 1831 bp Ixora bibracteata QL-PLN-00-007 565 bp View
HG970763.1 nt Ixora cumingiana chloroplast trnT-t... 1688 bp Ixora cumingiana QL-PLN-00-007 565 bp View
HG970775.1 nt Ixora palawaensis chloroplast trnT-... 1666 bp Ixora palawaensis QL-PLN-00-007 565 bp View
HG970783.1 nt Ixora salicifolia chloroplast trnT-... 1690 bp Ixora salicifolia QL-PLN-00-007 565 bp View
HG970790.1 nt Ixora sp. Chavez 13-315 chloroplast... 1744 bp Ixora sp. Chavez 13-315 QL-PLN-00-007 565 bp View
EU817464.1 nt Ixora coccinea trnT-trnL intergenic... 1720 bp Ixora coccinea QL-PLN-00-007 565 bp View
FJ150594.1 nt Ixora sp. Geesink et al. 7226 vouch... 1609 bp Ixora sp. Geesink et al. 7226 QL-PLN-00-007 565 bp View
FJ150596.1 nt Ixora sp. Vidal 5758B voucher Vidal... 1599 bp Ixora sp. Vidal 5758B QL-PLN-00-007 565 bp View
FJ150597.1 nt Ixora sp. Nissen 89BIO01344 DN89 vo... 1604 bp Ixora sp. Nissen 89BIO01344 DN89 QL-PLN-00-007 565 bp View
FJ150602.1 nt Ixora javanica voucher Munzinger 11... 1610 bp Ixora javanica QL-PLN-00-007 565 bp View
MZ221832.1 nt Ixora chinensis chloroplast, comple... 154787 bp Ixora chinensis QL-PLN-00-007 565 bp View
HG970758.1 nt Ixora angustilimba chloroplast trnT... 1684 bp Ixora angustilimba QL-PLN-00-007 565 bp View
HG970764.1 nt Ixora cumingiana chloroplast trnT-t... 1668 bp Ixora cumingiana QL-PLN-00-007 565 bp View
HG970769.1 nt Ixora longistipula chloroplast trnT... 1626 bp Ixora longistipula QL-PLN-00-007 565 bp View
HG970771.1 nt Ixora macrophylla chloroplast trnT-... 1637 bp Ixora macrophylla QL-PLN-00-007 565 bp View
HG970773.1 nt Ixora magnifica chloroplast trnT-tr... 1649 bp Ixora magnifica QL-PLN-00-007 565 bp View
HG970774.1 nt Ixora myriantha chloroplast trnT-tr... 1688 bp Ixora myriantha QL-PLN-00-007 565 bp View
HG970776.1 nt Ixora palawaensis chloroplast trnT-... 1675 bp Ixora palawaensis QL-PLN-00-007 565 bp View
HG970778.1 nt Ixora philippinensis chloroplast tr... 1633 bp Ixora philippinensis QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.