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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 116490 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A00782.1 emblrelpat Plasmid pDMI,1 DNA sequence from pa... 3740 bp synthetic construct QL-ELE-00-002 215 bp View
A00782.1 emblrelpat Plasmid pDMI,1 DNA sequence from pa... 3740 bp synthetic construct QL-ELE-00-003 173 bp View
A02231.1 emblrelpat Plasmid pDMI,1 DNA 3740 bp synthetic construct QL-ELE-00-002 215 bp View
A02231.1 emblrelpat Plasmid pDMI,1 DNA 3740 bp synthetic construct QL-ELE-00-003 173 bp View
A02297.1 emblrelpat Plasmid pDMI,1 DNA 3740 bp synthetic construct QL-ELE-00-002 215 bp View
A02297.1 emblrelpat Plasmid pDMI,1 DNA 3740 bp synthetic construct QL-ELE-00-003 173 bp View
A02741.1 emblrelpat Artificial sequence of pDMI.1 plasmid 3740 bp synthetic construct QL-ELE-00-002 215 bp View
A02741.1 emblrelpat Artificial sequence of pDMI.1 plasmid 3740 bp synthetic construct QL-ELE-00-003 173 bp View
A07054.1 emblrelpat Artificial sequence neo and lacI ge... 3740 bp synthetic construct QL-ELE-00-002 215 bp View
A07054.1 emblrelpat Artificial sequence neo and lacI ge... 3740 bp synthetic construct QL-ELE-00-003 173 bp View
A10362.1 emblrelpat Artificial sequence of plasmid pDMI,1 3740 bp synthetic construct QL-ELE-00-002 215 bp View
A10362.1 emblrelpat Artificial sequence of plasmid pDMI,1 3740 bp synthetic construct QL-ELE-00-003 173 bp View
A14595.1 emblrelpat Synthetic nucleotide sequence of th... 3740 bp synthetic construct QL-ELE-00-002 215 bp View
A14595.1 emblrelpat Synthetic nucleotide sequence of th... 3740 bp synthetic construct QL-ELE-00-003 173 bp View
A18050.1 emblrelpat DNA for transforming monocotyledono... 5399 bp synthetic construct QL-ELE-00-002 215 bp View
A18050.1 emblrelpat DNA for transforming monocotyledono... 5399 bp synthetic construct QL-ELE-00-003 173 bp View
A18051.1 emblrelpat DNA used as a probe for neo gene se... 1186 bp synthetic construct QL-ELE-00-002 215 bp View
A18051.1 emblrelpat DNA used as a probe for neo gene se... 1186 bp synthetic construct QL-ELE-00-003 173 bp View
A18755.1 emblrelpat plasmid pREP4 3740 bp synthetic construct QL-ELE-00-002 215 bp View
A18755.1 emblrelpat plasmid pREP4 3740 bp synthetic construct QL-ELE-00-003 173 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.