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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 266 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DI364094.1 emblrelpat KR 1020130122635-A/14: METHODS FOR ... 9621 bp synthetic construct QL-CON-00-015 136 bp View
DI364095.1 emblrelpat KR 1020130122635-A/15: METHODS FOR ... 7343 bp synthetic construct QL-CON-00-015 136 bp View
DI364096.1 emblrelpat KR 1020130122635-A/16: METHODS FOR ... 10829 bp synthetic construct QL-CON-00-015 136 bp View
DI366711.1 emblrelpat KR 1020130083495-A/10: METHODS FOR ... 3900 bp synthetic construct QL-CON-00-015 136 bp View
DI366712.1 emblrelpat KR 1020130083495-A/11: METHODS FOR ... 4680 bp synthetic construct QL-CON-00-015 136 bp View
DI366713.1 emblrelpat KR 1020130083495-A/12: METHODS FOR ... 5490 bp synthetic construct QL-CON-00-015 136 bp View
DI366714.1 emblrelpat KR 1020130083495-A/13: METHODS FOR ... 5606 bp synthetic construct QL-CON-00-015 136 bp View
DI366715.1 emblrelpat KR 1020130083495-A/14: METHODS FOR ... 6464 bp synthetic construct QL-CON-00-015 136 bp View
DJ029509.1 emblrelpat GENETIC TRANSFORMATION USING A PARP... 6548 bp synthetic construct QL-CON-00-015 136 bp View
DJ029511.1 emblrelpat GENETIC TRANSFORMATION USING A PARP... 6291 bp synthetic construct QL-CON-00-015 136 bp View
DJ057709.1 emblrelpat Improved targeted DNA insertion in ... 5345 bp unidentified QL-CON-00-015 149 bp View
DQ225748.1 nt Gene trapping Ds/T-DNA vector pNU39... 19278 bp Gene trapping Ds/T-DNA vector pNU393A1 QL-CON-00-015 168 bp View
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QL-CON-00-015 168 bp View
DQ225750.1 nt Gene trapping Ds/T-DNA vector pNU43... 22204 bp Gene trapping Ds/T-DNA vector pNU435 QL-CON-00-015 168 bp View
DQ780877.1 nt Reporter vector pBNP1, complete seq... 6985 bp Reporter vector pBNP1 QL-CON-00-015 142 bp View
E31990.1 emblrelpat Mutated barnase gene and transgenic... 6548 bp unidentified QL-CON-00-015 136 bp View
E31991.1 emblrelpat Mutated barnase gene and transgenic... 6539 bp unidentified QL-CON-00-015 136 bp View
E41551.1 emblrelpat Method for yielding male abortive p... 5228 bp synthetic construct QL-CON-00-015 136 bp View
E41553.1 emblrelpat Method for yielding male abortive p... 7492 bp synthetic construct QL-CON-00-015 136 bp View
EA122698.1 emblrelpat Sequence 12 from patent US 7205454. 8514 bp unidentified QL-CON-00-015 136 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.