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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 266 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CS376393.1 emblrelpat Sequence 7 from Patent WO2006074956. 6102 bp synthetic construct QL-CON-00-015 136 bp View
CS376394.1 emblrelpat Sequence 8 from Patent WO2006074956. 3852 bp synthetic construct QL-CON-00-015 154 bp View
CS479313.1 emblrelpat Sequence 10 from Patent WO2006136351. 3900 bp synthetic construct QL-CON-00-015 136 bp View
CS479314.1 emblrelpat Sequence 11 from Patent WO2006136351. 4680 bp synthetic construct QL-CON-00-015 136 bp View
CS479315.1 emblrelpat Sequence 12 from Patent WO2006136351. 5490 bp synthetic construct QL-CON-00-015 136 bp View
CS479316.1 emblrelpat Sequence 13 from Patent WO2006136351. 5606 bp synthetic construct QL-CON-00-015 136 bp View
CS479317.1 emblrelpat Sequence 14 from Patent WO2006136351. 6464 bp synthetic construct QL-CON-00-015 136 bp View
DD230369.1 emblrelpat Wound-inducible expression in plants. 13199 bp synthetic construct QL-CON-00-015 136 bp View
DD448757.1 emblrelpat Methods and means for increasing th... 12987 bp synthetic construct QL-CON-00-015 136 bp View
DD448758.1 emblrelpat Methods and means for increasing th... 13226 bp synthetic construct QL-CON-00-015 136 bp View
DI011227.1 emblrelpat MUTATED BARNASE GENE AND PLANT TRAN... 6539 bp unidentified QL-CON-00-015 136 bp View
DI029356.1 emblrelpat METHOD OF CONSTRUCTING MALE STERILE... 5228 bp unidentified QL-CON-00-015 136 bp View
DI034674.1 emblrelpat MUTATED BARNASE GENE AND PLANT TRAN... 6548 bp unidentified QL-CON-00-015 136 bp View
DI060047.1 emblrelpat METHOD OF CONSTRUCTING MALE STERILE... 7492 bp unidentified QL-CON-00-015 136 bp View
DI169535.1 emblrelpat KR 1020060012581-A/24: METHODS AND ... 12987 bp artificial sequences QL-CON-00-015 136 bp View
DI169536.1 emblrelpat KR 1020060012581-A/25: METHODS AND ... 13226 bp artificial sequences QL-CON-00-015 136 bp View
DI201816.1 emblrelpat KR 1020110126306-A/56: A method for... 3852 bp artificial sequences QL-CON-00-015 154 bp View
DI364091.1 emblrelpat KR 1020130122635-A/10: METHODS FOR ... 3971 bp synthetic construct QL-CON-00-015 136 bp View
DI364092.1 emblrelpat KR 1020130122635-A/12: METHODS FOR ... 8491 bp synthetic construct QL-CON-00-015 136 bp View
DI364093.1 emblrelpat KR 1020130122635-A/13: METHODS FOR ... 9567 bp synthetic construct QL-CON-00-015 136 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.