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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 266 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY346130.1 emblreltgn Zea mays transgenic clone pDE110 ph... 1115 bp Zea mays QL-CON-00-015 136 bp View
AY346130.1 nt Zea mays transgenic clone pDE110 ph... 1115 bp Zea mays QL-CON-00-015 136 bp View
BD013092.1 emblrelpat WO 2001024616-A/3: Method for produ... 5228 bp synthetic construct QL-CON-00-015 136 bp View
BD013094.1 emblrelpat WO 2001024616-A/5: Method for produ... 7492 bp synthetic construct QL-CON-00-015 136 bp View
BD069511.1 emblrelpat JP 2001511642-A/5: Improved BARSTAR... 5349 bp synthetic construct QL-CON-00-015 136 bp View
BD069514.1 emblrelpat JP 2001511642-A/8: Improved BARSTAR... 5611 bp synthetic construct QL-CON-00-015 136 bp View
BD074067.1 emblrelpat JP 2001514009-A/1: Improved Agrobac... 2345 bp synthetic construct QL-CON-00-015 136 bp View
BD242717.1 emblrelpat JP 2002528114-A/8: Glufosinate tole... 4161 bp synthetic construct QL-CON-00-015 103 bp View
CQ774407.1 emblrelpat Sequence 12 from Patent WO2004013169. 8514 bp synthetic construct QL-CON-00-015 136 bp View
CQ774408.1 emblrelpat Sequence 13 from Patent WO2004013169. 8692 bp synthetic construct QL-CON-00-015 136 bp View
CQ894856.1 emblrelpat Sequence 24 from Patent WO2004090140. 12987 bp synthetic construct QL-CON-00-015 136 bp View
CQ894857.1 emblrelpat Sequence 25 from Patent WO2004090140. 13226 bp synthetic construct QL-CON-00-015 136 bp View
CQ975581.1 emblrelpat Sequence 2 from Patent EP1496125. 6548 bp Plasmid PTS172 QL-CON-00-015 136 bp View
CQ975583.1 emblrelpat Sequence 4 from Patent EP1496125. 6291 bp Transformation vector pVE136 QL-CON-00-015 136 bp View
CS007934.1 emblrelpat Sequence 1 from Patent EP1502955. 12739 bp synthetic construct QL-CON-00-015 99 bp View
CS025573.1 emblrelpat Sequence 1 from Patent WO2005014827. 12739 bp synthetic construct QL-CON-00-015 99 bp View
CS104338.1 emblrelpat Sequence 6 from Patent WO2005049842. 5345 bp synthetic construct QL-CON-00-015 149 bp View
CS182458.1 emblrelpat Sequence 2 from Patent WO2005097999. 10870 bp Arabidopsis thaliana QL-CON-00-015 123 bp View
CS376391.1 emblrelpat Sequence 5 from Patent WO2006074956. 6082 bp synthetic construct QL-CON-00-015 136 bp View
CS376392.1 emblrelpat Sequence 6 from Patent WO2006074956. 6085 bp synthetic construct QL-CON-00-015 136 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.