JRC GMO-Amplicons | EURL GMFF

Amplicon finder

1) Select detection method(s) *
*Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown*
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)
*Note: If you select methods here, records that produce amplicons with any of those methods will be removed*

3) Select database(s) *
nt	GenBank nt section (NCBI)
emblreltgn	ENA transgenic data class division (EMBL-EBI)
emblrelpat	ENA patent data class division (EMBL-EBI)
nrnl1	Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 266 amplicons

Restrict to taxon(s):

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
OL322084.1	nt	Binary vector SCBV-GT127:GUS, compl...	12250 bp	Binary vector SCBV-GT127:GUS	QL-CON-00-015	136 bp	View
OL322085.1	nt	Binary vector SCBV-CHN1:GUS, comple...	12411 bp	Binary vector SCBV-CHN1:GUS	QL-CON-00-015	136 bp	View
OL322086.1	nt	Binary vector SCBMOV-MOR:GUS, compl...	12200 bp	Binary vector SCBMOV-MOR:GUS	QL-CON-00-015	136 bp	View
OL322087.1	nt	Binary vector SCBV-TX:GUS, complete...	12391 bp	Binary vector SCBV-TX:GUS	QL-CON-00-015	136 bp	View
OL322088.1	nt	Binary vector SCBV-FN2507:GUS, comp...	12460 bp	Binary vector SCBV-FN2507:GUS	QL-CON-00-015	136 bp	View
OL322089.1	nt	Binary vector SCBV-YZ2060:GUS, comp...	12490 bp	Binary vector SCBV-YZ2060:GUS	QL-CON-00-015	136 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.