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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 266 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
NRN_CQ894856 nrnl1 Sequence 24 from Patent WO200409014... 12987 bp unidentified QL-CON-00-015 136 bp View
NRN_CQ894857 nrnl1 Sequence 25 from Patent WO200409014... 13226 bp unidentified QL-CON-00-015 136 bp View
NRN_CS007934 nrnl1 Sequence 1 from Patent EP1502955. ... 12739 bp unidentified QL-CON-00-015 99 bp View
NRN_CS104338 nrnl1 Sequence 6 from Patent WO2005049842... 5345 bp unidentified QL-CON-00-015 149 bp View
NRN_CS182458 nrnl1 Sequence 2 from Patent WO2005097999. 10870 bp unidentified QL-CON-00-015 123 bp View
NRN_CS376391 nrnl1 Sequence 5 from Patent WO2006074956. 6082 bp unidentified QL-CON-00-015 136 bp View
NRN_CS376392 nrnl1 Sequence 6 from Patent WO2006074956. 6085 bp unidentified QL-CON-00-015 136 bp View
NRN_CS376393 nrnl1 Sequence 7 from Patent WO2006074956. 6102 bp unidentified QL-CON-00-015 136 bp View
NRN_CS376394 nrnl1 Sequence 8 from Patent WO2006074956. 3852 bp unidentified QL-CON-00-015 154 bp View
NRN_CS479313 nrnl1 Sequence 10 from Patent WO200613635... 3900 bp unidentified QL-CON-00-015 136 bp View
NRN_CS479314 nrnl1 Sequence 11 from Patent WO200613635... 4680 bp unidentified QL-CON-00-015 136 bp View
NRN_CS479315 nrnl1 Sequence 12 from Patent WO200613635... 5490 bp unidentified QL-CON-00-015 136 bp View
NRN_CS479316 nrnl1 Sequence 13 from Patent WO200613635... 5606 bp unidentified QL-CON-00-015 136 bp View
NRN_CS479317 nrnl1 Sequence 14 from Patent WO200613635... 6464 bp unidentified QL-CON-00-015 136 bp View
NRN_E31991 nrnl1 Mutated barnase gene and transgenic... 6539 bp unidentified QL-CON-00-015 136 bp View
NRN_FB702577 nrnl1 Sequence 6 from Patent EP1882742. ... 11465 bp unidentified QL-CON-00-015 123 bp View
NRN_FB706568 nrnl1 Sequence 7 from Patent WO2007125264... 16177 bp unidentified QL-CON-00-015 103 bp View
NRN_GZ510880 nrnl1 Sequence 35 from patent US 8269068. 9192 bp unidentified QL-CON-00-015 102 bp View
OL322082.1 nt Binary vector SCBV-CHN2:GUS, comple... 12229 bp Binary vector SCBV-CHN2:GUS QL-CON-00-015 136 bp View
OL322083.1 nt Binary vector SCBV-FN39:GUS, comple... 12409 bp Binary vector SCBV-FN39:GUS QL-CON-00-015 136 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.