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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 10340 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB289796.1 nt Gateway binary vector pGWB42 DNA, c... 17955 bp Gateway binary vector pGWB42 QT-ELE-00-001 79 bp View
AB289797.1 nt Gateway binary vector pGWB43 DNA, c... 17097 bp Gateway binary vector pGWB43 QT-ELE-00-001 79 bp View
AB289798.1 nt Gateway binary vector pGWB44 DNA, c... 17953 bp Gateway binary vector pGWB44 QT-ELE-00-001 79 bp View
AB289798.1 nt Gateway binary vector pGWB44 DNA, c... 17953 bp Gateway binary vector pGWB44 QT-ELE-00-001 79 bp View
AB289799.1 nt Gateway binary vector pGWB45 DNA, c... 17955 bp Gateway binary vector pGWB45 QT-ELE-00-001 79 bp View
AB289799.1 nt Gateway binary vector pGWB45 DNA, c... 17955 bp Gateway binary vector pGWB45 QT-ELE-00-001 79 bp View
AB294426.1 nt Gateway binary vector pGWB402 DNA, ... 11685 bp Gateway binary vector pGWB402 QT-ELE-00-001 79 bp View
AB294427.1 nt Gateway binary vector pGWB402omega ... 11678 bp Gateway binary vector pGWB402omega QT-ELE-00-001 79 bp View
AB294429.1 nt Gateway binary vector pGWB405 DNA, ... 12414 bp Gateway binary vector pGWB405 QT-ELE-00-001 79 bp View
AB294430.1 nt Gateway binary vector pGWB406 DNA, ... 12407 bp Gateway binary vector pGWB406 QT-ELE-00-001 79 bp View
AB294432.1 nt Gateway binary vector pGWB408 DNA, ... 11703 bp Gateway binary vector pGWB408 QT-ELE-00-001 79 bp View
AB294433.1 nt Gateway binary vector pGWB409 DNA, ... 11705 bp Gateway binary vector pGWB409 QT-ELE-00-001 79 bp View
AB294435.1 nt Gateway binary vector pGWB411 DNA, ... 11709 bp Gateway binary vector pGWB411 QT-ELE-00-001 79 bp View
AB294436.1 nt Gateway binary vector pGWB412 DNA, ... 11711 bp Gateway binary vector pGWB412 QT-ELE-00-001 79 bp View
AB294438.1 nt Gateway binary vector pGWB414 DNA, ... 11805 bp Gateway binary vector pGWB414 QT-ELE-00-001 79 bp View
AB294439.1 nt Gateway binary vector pGWB415 DNA, ... 11807 bp Gateway binary vector pGWB415 QT-ELE-00-001 79 bp View
AB294441.1 nt Gateway binary vector pGWB417 DNA, ... 11856 bp Gateway binary vector pGWB417 QT-ELE-00-001 79 bp View
AB294442.1 nt Gateway binary vector pGWB418 DNA, ... 11858 bp Gateway binary vector pGWB418 QT-ELE-00-001 79 bp View
AB294444.1 nt Gateway binary vector pGWB420 DNA, ... 12087 bp Gateway binary vector pGWB420 QT-ELE-00-001 79 bp View
AB294445.1 nt Gateway binary vector pGWB421 DNA, ... 12092 bp Gateway binary vector pGWB421 QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.