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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 10340 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
U10458.1 nt Binary cloning vector pPZP112 for p... 8909 bp Cloning vector pPZP112 QT-ELE-00-001 79 bp View
U10459.1 nt Binary cloning vector pPZP122 for p... 8626 bp Cloning vector pPZP122 QT-ELE-00-001 79 bp View
U10462.1 nt Binary cloning vector pPZP212 for p... 9014 bp Cloning vector pPZP212 QT-ELE-00-001 79 bp View
U10463.1 nt Binary cloning vector pPZP222 for p... 8731 bp Cloning vector pPZP222 QT-ELE-00-001 79 bp View
U10487.1 nt Binary cloning vector pPZP111 for p... 8909 bp Cloning vector pPZP111 QT-ELE-00-001 79 bp View
U10488.1 nt Binary cloning vector pPZP121 for p... 8626 bp Cloning vector pPZP121 QT-ELE-00-001 79 bp View
U10490.1 nt Binary cloning vector pPZP211 for p... 9014 bp Cloning vector pPZP211 QT-ELE-00-001 79 bp View
U10491.1 nt Binary cloning vector pPZP221 for p... 8731 bp Cloning vector pPZP221 QT-ELE-00-001 79 bp View
U28417.1 nt Cloning vector p35S-GFP, complete s... 4518 bp Cloning vector p35S-GFP QT-ELE-00-001 79 bp View
U84006.1 nt Expression vector pBSII-LUCINT fire... 5967 bp Expression vector pBSII-LUCINT QT-ELE-00-001 79 bp View
V00140.1 nt Cauliflower mosaic virus genome. 8031 bp Cauliflower mosaic virus QT-ELE-00-001 79 bp View
V00141.1 nt Cauliflower mosaic virus genome. 8024 bp Cauliflower mosaic virus QT-ELE-00-001 79 bp View
X02606.1 nt Cauliflower mosaic virus (CM4184) R... 2539 bp Cauliflower mosaic virus QT-ELE-00-001 80 bp View
X04879.1 nt CaMV promoter in pMON273 vector (tr... 354 bp synthetic construct QT-ELE-00-001 79 bp View
X05868.1 nt Plasmid pRT100 fragment (between Hi... 711 bp synthetic construct QT-ELE-00-001 79 bp View
X53860.1 nt Cauliflower mosaic virus (CaMV) gen... 2283 bp Cauliflower mosaic virus QT-ELE-00-001 79 bp View
X79465.1 nt Cauliflower Mosaic Virus strain B29... 8031 bp Cauliflower mosaic virus QT-ELE-00-001 79 bp View
X84105.1 nt Artificial sequences T-DNA of binai... 5288 bp synthetic construct QT-ELE-00-001 79 bp View
Y18556.1 nt Cloning vector pSLJ8313, T-DNA region 22574 bp Cloning vector pSLJ8313 QT-ELE-00-001 79 bp View
Y18556.1 nt Cloning vector pSLJ8313, T-DNA region 22574 bp Cloning vector pSLJ8313 QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.