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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 10340 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OM228710.1 nt Binary Vector pYL-PV4MF9, complete ... 12049 bp Binary Vector pYL-PV4MF9 QT-ELE-00-001 79 bp View
OM324335.1 nt Cloning vector PevoFERNY-NG, comple... 17534 bp Cloning vector PevoFERNY-NG QT-ELE-00-001 79 bp View
OM324336.1 nt Cloning vector PevorAC1-NG, complet... 17735 bp Cloning vector PevorAC1-NG QT-ELE-00-001 79 bp View
OM372495.1 nt Vector pLX-TRV1, complete sequence. 10774 bp Vector pLX-TRV1 QT-ELE-00-001 79 bp View
OM372496.1 nt Vector pLX-TRV2, complete sequence. 6241 bp Vector pLX-TRV2 QT-ELE-00-001 79 bp View
OM397417.1 nt Synthetic construct 5-enolpyruvylsh... 2075 bp synthetic construct QT-ELE-00-001 79 bp View
OM472561.1 nt Vector hyABE8e-NG, complete sequence. 17438 bp Vector hyABE8e-NG QT-ELE-00-001 79 bp View
OM472562.1 nt Vector hyABE8e-SpG, complete sequence. 17438 bp Vector hyABE8e-SpG QT-ELE-00-001 79 bp View
OM472563.1 nt Vector hyABE8e-SpRY, complete sequence. 17438 bp Vector hyABE8e-SpRY QT-ELE-00-001 79 bp View
OM677764.1 nt Tobacco rattle virus RNA2-based VIG... 12500 bp Tobacco rattle virus RNA2-based VIGS vector QT-ELE-00-001 79 bp View
ON092626.1 nt Moss mCitrine knock-in vector, comp... 6023 bp Moss mCitrine knock-in vector QT-ELE-00-001 79 bp View
ON092627.1 nt Moss mClover3 knock-in vector, comp... 6023 bp Moss mClover3 knock-in vector QT-ELE-00-001 79 bp View
OP013018.1 nt Synthetic construct clone pEnEOimsf... 6328 bp synthetic construct QT-ELE-00-001 79 bp View
OP013019.1 nt Synthetic construct clone pEnEOimsf... 6340 bp synthetic construct QT-ELE-00-001 79 bp View
OP013020.1 nt Synthetic construct clone pEnEOimsf... 6340 bp synthetic construct QT-ELE-00-001 79 bp View
OP013021.1 nt Synthetic construct clone pEnEOimsf... 6343 bp synthetic construct QT-ELE-00-001 79 bp View
OP013022.1 nt Synthetic construct clone pEnEOimsf... 6328 bp synthetic construct QT-ELE-00-001 79 bp View
OP013023.1 nt Synthetic construct clone pEnEOimsf... 6340 bp synthetic construct QT-ELE-00-001 79 bp View
OP013024.1 nt Synthetic construct clone pEnEOimsf... 6364 bp synthetic construct QT-ELE-00-001 79 bp View
OP013025.1 nt Synthetic construct clone pEnEOimsf... 6364 bp synthetic construct QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.