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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 10340 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OF040683.1 emblrelpat KR 1020200083595-A/8: PRODUCTION OF... 11042 bp synthetic construct QT-ELE-00-001 79 bp View
OF040683.1 emblrelpat KR 1020200083595-A/8: PRODUCTION OF... 11042 bp synthetic construct QT-ELE-00-001 79 bp View
OF043694.1 emblrelpat KR 1020200092363-A/162: MODIFIED NO... 4540 bp synthetic construct QT-ELE-00-001 79 bp View
OF043695.1 emblrelpat KR 1020200092363-A/163: MODIFIED NO... 2976 bp synthetic construct QT-ELE-00-001 79 bp View
OF043696.1 emblrelpat KR 1020200092363-A/164: MODIFIED NO... 5652 bp synthetic construct QT-ELE-00-001 79 bp View
OF043697.1 emblrelpat KR 1020200092363-A/165: MODIFIED NO... 2952 bp synthetic construct QT-ELE-00-001 79 bp View
OF043698.1 emblrelpat KR 1020200092363-A/166: MODIFIED NO... 2952 bp synthetic construct QT-ELE-00-001 79 bp View
OF066589.1 emblrelpat KR 1020200093076-A/9: MAIZE EVENT M... 14008 bp synthetic construct QT-ELE-00-001 79 bp View
OF066590.1 emblrelpat KR 1020200093076-A/10: MAIZE EVENT ... 16068 bp synthetic construct QT-ELE-00-001 79 bp View
OF089815.1 emblrelpat KR 1020200097003-A/21: Method for P... 12295 bp synthetic construct QT-ELE-00-001 79 bp View
OF097631.1 emblrelpat KR 1020200108500-A/161: PLANT REGUL... 1204 bp synthetic construct QT-ELE-00-001 79 bp View
OF097633.1 emblrelpat KR 1020200108500-A/163: PLANT REGUL... 1446 bp synthetic construct QT-ELE-00-001 79 bp View
OF097634.1 emblrelpat KR 1020200108500-A/164: PLANT REGUL... 675 bp synthetic construct QT-ELE-00-001 79 bp View
OF097636.1 emblrelpat KR 1020200108500-A/166: PLANT REGUL... 623 bp Cauliflower mosaic virus QT-ELE-00-001 79 bp View
OF097802.1 emblrelpat KR 1020200108501-A/161: PLANT REGUL... 1204 bp synthetic construct QT-ELE-00-001 79 bp View
OF097804.1 emblrelpat KR 1020200108501-A/163: PLANT REGUL... 1446 bp synthetic construct QT-ELE-00-001 79 bp View
OF097805.1 emblrelpat KR 1020200108501-A/164: PLANT REGUL... 675 bp synthetic construct QT-ELE-00-001 79 bp View
OF097807.1 emblrelpat KR 1020200108501-A/166: PLANT REGUL... 623 bp Cauliflower mosaic virus QT-ELE-00-001 79 bp View
OF117274.1 emblrelpat KR 1020200128129-A/116: METHODS FOR... 5489 bp synthetic construct QT-ELE-00-001 79 bp View
OF117276.1 emblrelpat KR 1020200128129-A/118: METHODS FOR... 11670 bp synthetic construct QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.