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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 10340 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB543135.1 nt Gateway binary vector pGWB626 DNA, ... 11574 bp Gateway binary vector pGWB626 QT-ELE-00-001 79 bp View
AB543136.1 nt Gateway binary vector pGWB627 DNA, ... 11576 bp Gateway binary vector pGWB627 QT-ELE-00-001 79 bp View
AB543138.1 nt Gateway binary vector pGWB629 DNA, ... 12087 bp Gateway binary vector pGWB629 QT-ELE-00-001 79 bp View
AB543142.1 nt Gateway binary vector pGWB641 DNA, ... 12258 bp Gateway binary vector pGWB641 QT-ELE-00-001 79 bp View
AB543143.1 nt Gateway binary vector pGWB642 DNA, ... 12260 bp Gateway binary vector pGWB642 QT-ELE-00-001 79 bp View
AB543145.1 nt Gateway binary vector pGWB644 DNA, ... 12258 bp Gateway binary vector pGWB644 QT-ELE-00-001 79 bp View
AB543146.1 nt Gateway binary vector pGWB645 DNA, ... 12260 bp Gateway binary vector pGWB645 QT-ELE-00-001 79 bp View
AB543148.1 nt Gateway binary vector pGWB651 DNA, ... 12258 bp Gateway binary vector pGWB651 QT-ELE-00-001 79 bp View
AB543149.1 nt Gateway binary vector pGWB652 DNA, ... 12257 bp Gateway binary vector pGWB652 QT-ELE-00-001 79 bp View
AB543151.1 nt Gateway binary vector pGWB654 DNA, ... 12219 bp Gateway binary vector pGWB654 QT-ELE-00-001 79 bp View
AB543152.1 nt Gateway binary vector pGWB655 DNA, ... 12218 bp Gateway binary vector pGWB655 QT-ELE-00-001 79 bp View
AB543154.1 nt Gateway binary vector pGWB660 DNA, ... 12255 bp Gateway binary vector pGWB660 QT-ELE-00-001 79 bp View
AB543155.1 nt Gateway binary vector pGWB661 DNA, ... 12254 bp Gateway binary vector pGWB661 QT-ELE-00-001 79 bp View
AB543174.1 nt Gateway binary vector pGWB460 DNA, ... 12399 bp Gateway binary vector pGWB460 QT-ELE-00-001 79 bp View
AB543175.1 nt Gateway binary vector pGWB461 DNA, ... 12398 bp Gateway binary vector pGWB461 QT-ELE-00-001 79 bp View
AB543177.1 nt Gateway binary vector pGWB560 DNA, ... 12720 bp Gateway binary vector pGWB560 QT-ELE-00-001 79 bp View
AB543178.1 nt Gateway binary vector pGWB561 DNA, ... 12719 bp Gateway binary vector pGWB561 QT-ELE-00-001 79 bp View
AB551245.2 nt Binary vector pZH2Bik DNA, complete... 12329 bp Binary vector pZH2Bik QT-ELE-00-001 79 bp View
AB551246.2 nt Binary vector pZH2B-2ox3i DNA, comp... 24552 bp Binary vector pZH2B-2ox3i QT-ELE-00-001 79 bp View
AB602442.1 nt Moss transformation vector pLGZ1 DN... 9789 bp Moss transformation vector pLGZ1 QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.