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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MM914751.1 emblrelpat Sequence 9 from patent US 10301640. 209 bp unidentified QL-ELE-00-023 137 bp View
MN164628.2 nt Binary vector for potato transforma... 26019 bp Binary vector pCIP99 QL-ELE-00-023 137 bp View
MN728551.1 nt Cloning vector pSMXL6-SMXL6-HA, com... 14241 bp Cloning vector pSMXL6-SMXL6-HA QL-ELE-00-023 137 bp View
MN728555.1 nt Cloning vector PAPs-CRISPR, complet... 15207 bp Cloning vector PAPs-CRISPR QL-ELE-00-023 137 bp View
MN728556.1 nt Cloning vector TCP1-CRISPR, complet... 16132 bp Cloning vector TCP1-CRISPR QL-ELE-00-023 137 bp View
MN780595.1 nt Cloning vector p35S-TCP1-SRDX, comp... 11046 bp Cloning vector p35S-TCP1-SRDX QL-ELE-00-023 137 bp View
MN780595.1 nt Cloning vector p35S-TCP1-SRDX, comp... 11046 bp Cloning vector p35S-TCP1-SRDX QL-ELE-00-023 137 bp View
MN793977.1 nt Cloning vector pSMXL6-SMXL6-no-EAR-... 14226 bp Cloning vector pSMXL6-SMXL6-no-EAR-HA QL-ELE-00-023 137 bp View
MN832866.1 nt Binary vector pCXSN, complete sequence. 13759 bp Binary vector pCXSN QL-ELE-00-023 137 bp View
MN856142.1 nt Ti plasmid binary vector pGSh17.040... 16189 bp Ti plasmid binary vector pGSh17.0404 QL-ELE-00-023 137 bp View
MN856142.1 nt Ti plasmid binary vector pGSh17.040... 16189 bp Ti plasmid binary vector pGSh17.0404 QL-ELE-00-023 137 bp View
MN856143.1 nt Ti plasmid binary vector pGSp18.012... 16705 bp Ti plasmid binary vector pGSp18.0129 QL-ELE-00-023 137 bp View
MN856143.1 nt Ti plasmid binary vector pGSp18.012... 16705 bp Ti plasmid binary vector pGSp18.0129 QL-ELE-00-023 137 bp View
MN856144.1 nt Ti plasmid binary vector pGSp18.010... 16702 bp Ti plasmid binary vector pGSp18.0102 QL-ELE-00-023 137 bp View
MN856144.1 nt Ti plasmid binary vector pGSp18.010... 16702 bp Ti plasmid binary vector pGSp18.0102 QL-ELE-00-023 137 bp View
MO050991.1 emblrelpat Sequence 4 from patent US 10316324. 209 bp unidentified QL-ELE-00-023 137 bp View
MO050997.1 emblrelpat Sequence 13 from patent US 10316324. 5302 bp unidentified QL-ELE-00-023 137 bp View
MO187273.1 emblrelpat Sequence 8 from patent US 10344305. 2615 bp unidentified QL-ELE-00-023 137 bp View
MO436654.1 emblrelpat Sequence 1 from patent US 10443069. 10952 bp unidentified QL-ELE-00-023 137 bp View
MO448150.1 emblrelpat Sequence 19 from patent US 10450580. 12168 bp unidentified QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.