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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK896896.1 nt Plant binary expression vector pNC-... 10473 bp Plant binary expression vector pNC-Cam1304-35S QL-ELE-00-023 137 bp View
MK896897.1 nt Plant binary expression vector pNC-... 13004 bp Plant binary expression vector pNC-Cam1304-MCS QL-ELE-00-023 137 bp View
MK896898.1 nt Plant binary expression vector pNC-... 12754 bp Plant binary expression vector pNC-Cam1304-RNAi QL-ELE-00-023 137 bp View
MK896899.1 nt Plant binary expression vector pNC-... 11185 bp Plant binary expression vector pNC-Cam1304-SubC QL-ELE-00-023 137 bp View
MK896900.1 nt Plant binary expression vector pNC-... 11186 bp Plant binary expression vector pNC-Cam1304-SubN QL-ELE-00-023 137 bp View
MK967457.1 nt Zea mays transgenic cultivar W22 c1... 2165 bp Zea mays QL-ELE-00-023 137 bp View
MK967457.1 emblreltgn Zea mays transgenic cultivar W22 c1... 2165 bp Zea mays QL-ELE-00-023 137 bp View
MM012785.1 emblrelpat Sequence 47 from patent US 10072271. 11410 bp unidentified QL-ELE-00-023 137 bp View
MM012787.1 emblrelpat Sequence 49 from patent US 10072271. 10386 bp unidentified QL-ELE-00-023 137 bp View
MM012797.1 emblrelpat Sequence 59 from patent US 10072271. 4968 bp unidentified QL-ELE-00-023 137 bp View
MM082287.1 emblrelpat Sequence 8 from patent US 10100341. 2615 bp unidentified QL-ELE-00-023 137 bp View
MM114586.1 emblrelpat Sequence 4 from patent US 10106810. 11745 bp unidentified QL-ELE-00-023 137 bp View
MM114631.1 emblrelpat Sequence 7 from patent US 10106811. 3316 bp unidentified QL-ELE-00-023 137 bp View
MM133634.1 emblrelpat Sequence 54 from patent US 10113179. 209 bp unidentified QL-ELE-00-023 137 bp View
MM133646.1 emblrelpat Sequence 75 from patent US 10113179. 5302 bp unidentified QL-ELE-00-023 137 bp View
MM133651.1 emblrelpat Sequence 81 from patent US 10113179. 7492 bp unidentified QL-ELE-00-023 137 bp View
MM133652.1 emblrelpat Sequence 82 from patent US 10113179. 7520 bp unidentified QL-ELE-00-023 137 bp View
MM133653.1 emblrelpat Sequence 83 from patent US 10113179. 7202 bp unidentified QL-ELE-00-023 137 bp View
MM133654.1 emblrelpat Sequence 84 from patent US 10113179. 7298 bp unidentified QL-ELE-00-023 137 bp View
MM133655.1 emblrelpat Sequence 85 from patent US 10113179. 7718 bp unidentified QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.