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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH397719.1 nt Plant Stable Overexpression Vector ... 9381 bp Plant Stable Overexpression Vector pRHVcGFP QL-ELE-00-023 137 bp View
MH397720.1 nt Plant Stable Overexpression Vector ... 9357 bp Plant Stable Overexpression Vector pRHVcRFP QL-ELE-00-023 137 bp View
MH423061.1 nt Plant Stable Expression Vector pRGE... 6428 bp Plant Stable Expression Vector pRGE QL-ELE-00-023 137 bp View
MH423062.1 nt Plant Stable Expression Vector pRGE... 6553 bp Plant Stable Expression Vector pRGEcHA QL-ELE-00-023 137 bp View
MH423063.1 nt Plant Stable Expression Vector pRGE... 6619 bp Plant Stable Expression Vector pRGEcMyc QL-ELE-00-023 137 bp View
MH427725.1 nt Plant Stable Expression Vector pRGE... 7156 bp Plant Stable Expression Vector pRGEcYFP QL-ELE-00-023 137 bp View
MH427726.1 nt Plant Stable Overexpression Vector ... 8415 bp Plant Stable Overexpression Vector pRGV QL-ELE-00-023 137 bp View
MH450168.1 nt Plant Stable Overexpression Vector ... 8540 bp Plant Stable Overexpression Vector pRGVcHA QL-ELE-00-023 137 bp View
MH450169.1 nt Plant Stable Overexpression Vector ... 8606 bp Plant Stable Overexpression Vector pRGVcMyc QL-ELE-00-023 137 bp View
MH450170.1 nt Plant Stable Overexpression Vector ... 9143 bp Plant Stable Overexpression Vector pRGVcGFP QL-ELE-00-023 137 bp View
MH450171.1 nt Plant Stable Overexpression Vector ... 9119 bp Plant Stable Overexpression Vector pRGVcRFP QL-ELE-00-023 137 bp View
MH450172.1 nt Plant Genome Editing Vector pRHCas9... 13079 bp Plant Genome Editing Vector pRHCas9 QL-ELE-00-023 137 bp View
MH450173.1 nt Plant Genome Editing Vector pRGCas9... 12841 bp Plant Genome Editing Vector pRGCas9 QL-ELE-00-023 137 bp View
MH453954.1 nt Cloning vector pAMCRE1, complete se... 6544 bp Cloning vector pAMCRE1 QL-ELE-00-023 137 bp View
MH453955.1 nt Cloning vector pAMGDlox-1, complete... 3988 bp Cloning vector pAMGDlox-1 QL-ELE-00-023 137 bp View
MH453956.1 nt Cloning vector pAMEXlox-1, complete... 5424 bp Cloning vector pAMEXlox-1 QL-ELE-00-023 137 bp View
MH625695.1 nt VIGS vector pTRV-RNA1, complete seq... 14395 bp VIGS vector pTRV-RNA1 QL-ELE-00-023 137 bp View
MH625696.1 nt VIGS vector pTRV-RNA2, complete seq... 8928 bp VIGS vector pTRV-RNA2 QL-ELE-00-023 137 bp View
MH675649.1 nt Phalaenopsis equestris MYB transcri... 929 bp Phalaenopsis equestris QL-ELE-00-023 137 bp View
MH801876.1 nt Synthetic construct lincosamide nuc... 1522 bp synthetic construct QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.