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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1655 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG733984.1 nt Binary vector pCHF3. 10194 bp Binary vector pCHF3 QL-ELE-00-023 137 bp View
MG733985.1 nt Binary vector pCNRNF3. 9892 bp Binary vector pCNRNF3 QL-ELE-00-023 137 bp View
MG733986.1 nt Binary vector pCNF3. 9385 bp Binary vector pCNF3 QL-ELE-00-023 137 bp View
MG733987.1 nt Binary vector pCNM3. 9409 bp Binary vector pCNM3 QL-ELE-00-023 137 bp View
MG891791.1 nt Cloning vector pLH334, complete seq... 9089 bp Cloning vector pLH334 QL-ELE-00-023 137 bp View
MG891792.1 nt Cloning vector pLH331, complete seq... 8334 bp Cloning vector pLH331 QL-ELE-00-023 137 bp View
MH373675.1 nt Protoplast BiFC Vector pRTVnVN, com... 5994 bp Protoplast BiFC Vector pRTVnVN QL-ELE-00-023 137 bp View
MH373676.1 nt Protoplast BiFC Vector pRTVnVC, com... 5778 bp Protoplast BiFC Vector pRTVnVC QL-ELE-00-023 137 bp View
MH373677.1 nt Protoplast BiFC Vector pRTVcVN, com... 6013 bp Protoplast BiFC Vector pRTVcVN QL-ELE-00-023 137 bp View
MH373678.1 nt Protoplast BiFC Vector pRTVcVC, com... 5797 bp Protoplast BiFC Vector pRTVcVC QL-ELE-00-023 137 bp View
MH373679.1 nt Plant Stable Expression Vector pRHE... 6666 bp Plant Stable Expression Vector pRHE QL-ELE-00-023 137 bp View
MH383102.1 nt Plant Stable Expression Vector pRHE... 6791 bp Plant Stable Expression Vector pRHEcHA QL-ELE-00-023 137 bp View
MH383103.1 nt Plant Stable Expression Vector pRHE... 6818 bp Plant Stable Expression Vector pRHEcMyc QL-ELE-00-023 137 bp View
MH383104.1 nt Plant Stable Expression Vector pRHE... 7394 bp Plant Stable Expression Vector pRHEcYFP QL-ELE-00-023 137 bp View
MH383105.1 nt Plant Stable Overexpression Vector ... 8653 bp Plant Stable Overexpression Vector pRHV QL-ELE-00-023 137 bp View
MH383106.1 nt Plant Stable Overexpression Vector ... 8756 bp Plant Stable Overexpression Vector pRHVnHA QL-ELE-00-023 137 bp View
MH397715.1 nt Plant Stable Overexpression Vector ... 8822 bp Plant Stable Overexpression Vector pRHVnMyc QL-ELE-00-023 137 bp View
MH397716.1 nt Plant Stable Overexpression Vector ... 9359 bp Plant Stable Overexpression Vector pRHVnGFP QL-ELE-00-023 137 bp View
MH397717.1 nt Plant Stable Overexpression Vector ... 8778 bp Plant Stable Overexpression Vector pRHVcHA QL-ELE-00-023 137 bp View
MH397718.1 nt Plant Stable Overexpression Vector ... 8805 bp Plant Stable Overexpression Vector pRHVcMyc QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.