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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8188 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB720111.1 nt Moss transformation vector pTN82 DN... 2796 bp Moss transformation vector pTN82 QL-ELE-00-004 123 bp View
AB752375.1 nt Gateway binary vector pGWB480omega ... 12333 bp Gateway binary vector pGWB480omega QL-ELE-00-004 123 bp View
AB752376.1 nt Gateway binary vector pGWB580omega ... 12650 bp Gateway binary vector pGWB580omega QL-ELE-00-004 123 bp View
AB752377.1 nt Gateway binary vector pGWB80 DNA, c... 17897 bp Gateway binary vector pGWB80 QL-ELE-00-004 123 bp View
AB758445.1 nt Moss transformation vector pTFH22.4... 6567 bp Moss transformation vector pTFH22.4 QL-ELE-00-004 123 bp View
AB863136.1 nt Cauliflower mosaic virus DNA, compl... 8011 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AB863137.1 nt Cauliflower mosaic virus DNA, compl... 8014 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AB863138.1 nt Cauliflower mosaic virus DNA, compl... 8011 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AB863157.1 nt Cauliflower mosaic virus DNA, compl... 8022 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AB863158.1 nt Cauliflower mosaic virus DNA, compl... 8028 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AB863163.1 nt Cauliflower mosaic virus DNA, compl... 8028 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AB863192.1 nt Cauliflower mosaic virus DNA, compl... 8015 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AB863193.1 nt Cauliflower mosaic virus DNA, compl... 8026 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AB863194.1 nt Cauliflower mosaic virus DNA, compl... 8017 bp Cauliflower mosaic virus QL-ELE-00-004 123 bp View
AF078810.1 nt Cloning vector pAVA319, complete se... 4780 bp Cloning vector pAVA319 QL-ELE-00-004 123 bp View
AF184978.1 nt Binary vector pCLD04541, complete s... 27608 bp Binary vector pCLD04541 QL-ELE-00-004 123 bp View
AF218816.1 nt Cloning vector pEGAD, complete sequ... 12594 bp Cloning vector pEGAD QL-ELE-00-004 123 bp View
AF234292.1 nt Binary vector pCAMBIA-1200, complet... 9110 bp Binary vector pCAMBIA-1200 QL-ELE-00-004 122 bp View
AF234293.1 nt Binary vector pCAMBIA-1201, complet... 12001 bp Binary vector pCAMBIA-1201 QL-ELE-00-004 122 bp View
AF234294.1 nt Binary vector pCAMBIA-1281Z, comple... 11378 bp Binary vector pCAMBIA-1281Z QL-ELE-00-004 122 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.