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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8188 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OQ632787.1 nt Cloning vector 35S-GAL4BD-GWY/Pam, ... 7480 bp Cloning vector 35S-GAL4BD-GWY/Pam QL-ELE-00-004 123 bp View
OQ632788.1 nt Cloning vector 35S-VP16-GWY/pAM, co... 7327 bp Cloning vector 35S-VP16-GWY/pAM QL-ELE-00-004 123 bp View
OQ859100.1 nt Synthetic construct Mla7 native con... 15875 bp synthetic construct QL-ELE-00-004 123 bp View
OR217441.1 nt System destination vector pDESattR1... 13143 bp System destination vector pDESattR1-4 QL-ELE-00-004 122 bp View
OR636129.1 nt Vector pEAQHT/35s:p19:xGluchy:mCher... 10698 bp Vector pEAQHT/35s:p19:xGluchy:mCherry:NosT QL-ELE-00-004 123 bp View
OR763841.1 nt Cloning vector pUQC10196, complete ... 6132 bp Cloning vector pUQC10196 QL-ELE-00-004 123 bp View
OR797711.1 nt Binary vector pCAMBIA 1301-GFP-alph... 14209 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin QL-ELE-00-004 122 bp View
OR797712.1 nt Binary vector pCAMBIA 1301-GFP-alph... 16020 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin-mcherry QL-ELE-00-004 122 bp View
OR802131.1 nt Transformation vector PIG2.0, compl... 8597 bp Transformation vector PIG2.0 QL-ELE-00-004 123 bp View
PA263415.1 emblrelpat JP 2021078362-A/4: Method for intro... 11588 bp synthetic construct QL-ELE-00-004 123 bp View
PA264904.1 emblrelpat WO 2021095802-A/4: Method for intro... 11588 bp synthetic construct QL-ELE-00-004 123 bp View
PP001171.1 nt Binary vector pEG100-SW, complete s... 11151 bp Binary vector pEG100-SW QL-ELE-00-004 123 bp View
U10458.1 nt Binary cloning vector pPZP112 for p... 8909 bp Cloning vector pPZP112 QL-ELE-00-004 123 bp View
U10459.1 nt Binary cloning vector pPZP122 for p... 8626 bp Cloning vector pPZP122 QL-ELE-00-004 123 bp View
U10462.1 nt Binary cloning vector pPZP212 for p... 9014 bp Cloning vector pPZP212 QL-ELE-00-004 123 bp View
U10463.1 nt Binary cloning vector pPZP222 for p... 8731 bp Cloning vector pPZP222 QL-ELE-00-004 123 bp View
U10487.1 nt Binary cloning vector pPZP111 for p... 8909 bp Cloning vector pPZP111 QL-ELE-00-004 123 bp View
U10488.1 nt Binary cloning vector pPZP121 for p... 8626 bp Cloning vector pPZP121 QL-ELE-00-004 123 bp View
U10490.1 nt Binary cloning vector pPZP211 for p... 9014 bp Cloning vector pPZP211 QL-ELE-00-004 123 bp View
U10491.1 nt Binary cloning vector pPZP221 for p... 8731 bp Cloning vector pPZP221 QL-ELE-00-004 123 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.