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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8188 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB289781.1 nt Gateway binary vector pGWB18 DNA, c... 17409 bp Gateway binary vector pGWB18 QL-ELE-00-004 123 bp View
AB289782.1 nt Gateway binary vector pGWB19 DNA, c... 16782 bp Gateway binary vector pGWB19 QL-ELE-00-004 123 bp View
AB289783.1 nt Gateway binary vector pGWB20 DNA, c... 17638 bp Gateway binary vector pGWB20 QL-ELE-00-004 123 bp View
AB289784.1 nt Gateway binary vector pGWB21 DNA, c... 17643 bp Gateway binary vector pGWB21 QL-ELE-00-004 123 bp View
AB289785.1 nt Gateway binary vector pGWB22 DNA, c... 17058 bp Gateway binary vector pGWB22 QL-ELE-00-004 123 bp View
AB289786.1 nt Gateway binary vector pGWB23 DNA, c... 17914 bp Gateway binary vector pGWB23 QL-ELE-00-004 123 bp View
AB289787.1 nt Gateway binary vector pGWB24 DNA, c... 17916 bp Gateway binary vector pGWB24 QL-ELE-00-004 123 bp View
AB289788.1 nt Gateway binary vector pGWB25 DNA, c... 16413 bp Gateway binary vector pGWB25 QL-ELE-00-004 123 bp View
AB289789.1 nt Gateway binary vector pGWB26 DNA, c... 17269 bp Gateway binary vector pGWB26 QL-ELE-00-004 123 bp View
AB289790.1 nt Gateway binary vector pGWB27 DNA, c... 17271 bp Gateway binary vector pGWB27 QL-ELE-00-004 123 bp View
AB289791.1 nt Gateway binary vector pGWB28 DNA, c... 16926 bp Gateway binary vector pGWB28 QL-ELE-00-004 123 bp View
AB289792.1 nt Gateway binary vector pGWB29 DNA, c... 17782 bp Gateway binary vector pGWB29 QL-ELE-00-004 123 bp View
AB289793.1 nt Gateway binary vector pGWB35 DNA, c... 18033 bp Gateway binary vector pGWB35 QL-ELE-00-004 123 bp View
AB289794.1 nt Gateway binary vector pGWB40 DNA, c... 17097 bp Gateway binary vector pGWB40 QL-ELE-00-004 123 bp View
AB289795.1 nt Gateway binary vector pGWB41 DNA, c... 17953 bp Gateway binary vector pGWB41 QL-ELE-00-004 123 bp View
AB289796.1 nt Gateway binary vector pGWB42 DNA, c... 17955 bp Gateway binary vector pGWB42 QL-ELE-00-004 123 bp View
AB289797.1 nt Gateway binary vector pGWB43 DNA, c... 17097 bp Gateway binary vector pGWB43 QL-ELE-00-004 123 bp View
AB289798.1 nt Gateway binary vector pGWB44 DNA, c... 17953 bp Gateway binary vector pGWB44 QL-ELE-00-004 123 bp View
AB289799.1 nt Gateway binary vector pGWB45 DNA, c... 17955 bp Gateway binary vector pGWB45 QL-ELE-00-004 123 bp View
AB294427.1 nt Gateway binary vector pGWB402omega ... 11678 bp Gateway binary vector pGWB402omega QL-ELE-00-004 123 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.