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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8188 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A60112.1 emblrelpat Sequence 5 from Patent WO9706267. 5560 bp Transformation vector pTHW142 QL-ELE-00-004 123 bp View
A70078.1 emblrelpat Sequence 1 from Patent WO9812321. 899 bp Drosophila melanogaster QL-ELE-00-004 123 bp View
A71437.1 emblrelpat Sequence 7 from Patent WO9810081. 5349 bp unidentified QL-ELE-00-004 123 bp View
A71440.1 emblrelpat Sequence 10 from Patent WO9810081. 5611 bp unidentified QL-ELE-00-004 123 bp View
A75886.1 emblrelpat Sequence 1 from Patent WO9321335. 4883 bp unidentified QL-ELE-00-004 123 bp View
A75888.1 emblrelpat Sequence 3 from Patent WO9321335. 5636 bp unidentified QL-ELE-00-004 123 bp View
A76916.1 emblrelpat Sequence 2 from Patent EP0757102. 6548 bp Plasmid PTS172 QL-ELE-00-004 123 bp View
A78762.1 emblrelpat Sequence 23 from Patent EP0566525. 446 bp Tobacco mosaic virus QL-ELE-00-004 123 bp View
A83076.1 emblrelpat Sequence 10 from Patent WO9853083. 1949 bp unidentified QL-ELE-00-004 123 bp View
A91666.1 emblrelpat Sequence 1 from Patent WO9824920. 3159 bp unidentified QL-ELE-00-004 123 bp View
A91667.1 emblrelpat Sequence 2 from Patent WO9824920. 3030 bp unidentified QL-ELE-00-004 123 bp View
A91668.1 emblrelpat Sequence 3 from Patent WO9824920. 2656 bp unidentified QL-ELE-00-004 123 bp View
A94795.1 emblrelpat Sequence 39 from Patent WO9932630. 1138 bp unidentified QL-ELE-00-004 123 bp View
A95051.1 emblrelpat Sequence 8 from Patent WO9929880. 4796 bp unidentified QL-ELE-00-004 123 bp View
A95052.1 emblrelpat Sequence 9 from Patent WO9929880. 4186 bp unidentified QL-ELE-00-004 123 bp View
AB027254.1 nt Cloning vector pSB4 tetR, tetA, hyg... 39902 bp Cloning vector pSB4 QL-ELE-00-004 123 bp View
AB055064.1 nt Synthetic transposable element dAc-... 7635 bp synthetic construct QL-ELE-00-004 123 bp View
AB209952.1 emblreltgn Glycine max transgenic cp4epsps gen... 2457 bp Glycine max QL-ELE-00-004 123 bp View
AB209952.1 nt Glycine max transgenic cp4epsps gen... 2457 bp Glycine max QL-ELE-00-004 123 bp View
AB267704.2 nt Moss transformation vector pTN80 DN... 2104 bp Moss transformation vector pTN80 QL-ELE-00-004 123 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.