European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8188 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AP018602.1 nt Gateway vector R4pMpGWB209 DNA, com... 10761 bp Gateway vector R4pMpGWB209 QL-ELE-00-004 123 bp View
AP018603.1 nt Gateway vector R4pMpGWB231 DNA, com... 12486 bp Gateway vector R4pMpGWB231 QL-ELE-00-004 123 bp View
AP018604.1 nt Gateway vector R4pMpGWB239 DNA, com... 11454 bp Gateway vector R4pMpGWB239 QL-ELE-00-004 123 bp View
AP018605.1 nt Gateway vector R4pMpGWB254 DNA, com... 10857 bp Gateway vector R4pMpGWB254 QL-ELE-00-004 123 bp View
AP018606.1 nt Gateway vector R4pMpGWB256 DNA, com... 11415 bp Gateway vector R4pMpGWB256 QL-ELE-00-004 123 bp View
AP018607.1 nt Gateway vector R4pMpGWB257 DNA, com... 10908 bp Gateway vector R4pMpGWB257 QL-ELE-00-004 123 bp View
AP018608.1 nt Gateway vector R4pMpGWB294 DNA, com... 11586 bp Gateway vector R4pMpGWB294 QL-ELE-00-004 123 bp View
AP018609.1 nt Gateway vector R4pMpGWB295 DNA, com... 11484 bp Gateway vector R4pMpGWB295 QL-ELE-00-004 123 bp View
AP018610.1 nt Gateway vector R4pMpGWB301 DNA, com... 12177 bp Gateway vector R4pMpGWB301 QL-ELE-00-004 123 bp View
AP018611.1 nt Gateway vector R4pMpGWB304 DNA, com... 13983 bp Gateway vector R4pMpGWB304 QL-ELE-00-004 123 bp View
AP018612.1 nt Gateway vector R4pMpGWB307 DNA, com... 12888 bp Gateway vector R4pMpGWB307 QL-ELE-00-004 123 bp View
AP018613.1 nt Gateway vector R4pMpGWB309 DNA, com... 12195 bp Gateway vector R4pMpGWB309 QL-ELE-00-004 123 bp View
AP018614.1 nt Gateway vector R4pMpGWB331 DNA, com... 13920 bp Gateway vector R4pMpGWB331 QL-ELE-00-004 123 bp View
AP018615.1 nt Gateway vector R4pMpGWB339 DNA, com... 12888 bp Gateway vector R4pMpGWB339 QL-ELE-00-004 123 bp View
AP018616.1 nt Gateway vector R4pMpGWB354 DNA, com... 12291 bp Gateway vector R4pMpGWB354 QL-ELE-00-004 123 bp View
AP018617.1 nt Gateway vector R4pMpGWB356 DNA, com... 12849 bp Gateway vector R4pMpGWB356 QL-ELE-00-004 123 bp View
AP018618.1 nt Gateway vector R4pMpGWB357 DNA, com... 12342 bp Gateway vector R4pMpGWB357 QL-ELE-00-004 123 bp View
AP018619.1 nt Gateway vector R4pMpGWB394 DNA, com... 13020 bp Gateway vector R4pMpGWB394 QL-ELE-00-004 123 bp View
AP018620.1 nt Gateway vector R4pMpGWB395 DNA, com... 12918 bp Gateway vector R4pMpGWB395 QL-ELE-00-004 123 bp View
AP018621.1 nt Gateway vector R4pMpGWB401 DNA, com... 11009 bp Gateway vector R4pMpGWB401 QL-ELE-00-004 123 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.