Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 8188 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ315956.1 nt Binary Cloning vector pAC161 10828 bp Binary cloning vector pAC161 QL-ELE-00-004 123 bp View
AJ537513.1 nt Synthetic construct plasmid pAC106 10877 bp synthetic construct QL-ELE-00-004 123 bp View
AJ537513.1 nt Synthetic construct plasmid pAC106 10877 bp synthetic construct QL-ELE-00-004 123 bp View
AJ551314.1 nt Transfection vector pBTdest 4462 bp Transfection vector pBTdest QL-ELE-00-004 123 bp View
AJ616346.1 nt Nicotiana tabacum chloroplast kr1 D... 1431 bp Nicotiana tabacum QL-ELE-00-004 123 bp View
AM235741.1 nt Synthetic construct for plastid to ... 3477 bp synthetic construct QL-ELE-00-004 123 bp View
AM773751.1 nt Cloning vector pDH51-GW-CFP 5851 bp Cloning vector pDH51-GW-CFP QL-ELE-00-004 123 bp View
AM773752.1 nt Cloning vector pDH51-GW-YFP 5851 bp Cloning vector pDH51-GW-YFP QL-ELE-00-004 123 bp View
AM773753.1 nt Cloning vector pDH51-GW-EGFP 5851 bp Cloning vector pDH51-GW-EGFP QL-ELE-00-004 123 bp View
AM779183.1 nt Cloning vector pDH51-GW-YFPn 5599 bp Cloning vector pDH51-GW-YFPn QL-ELE-00-004 123 bp View
AM779184.1 nt Cloning vector pDH51-GW-YFPc 5422 bp Cloning vector pDH51-GW-YFPc QL-ELE-00-004 123 bp View
AM884371.1 nt Cloning vector pGBPGWC 7652 bp Cloning vector pGBPGWC QL-ELE-00-004 123 bp View
AM884372.1 nt Cloning vector pGBPGWG 7652 bp Cloning vector pGBPGWG QL-ELE-00-004 123 bp View
AM884373.1 nt Cloning vector pGBPGWY 7652 bp Cloning vector pGBPGWY QL-ELE-00-004 123 bp View
AM884374.1 nt Cloning vector pGHPGWC 8342 bp Cloning vector pGHPGWC QL-ELE-00-004 123 bp View
AM884374.1 nt Cloning vector pGHPGWC 8342 bp Cloning vector pGHPGWC QL-ELE-00-004 123 bp View
AM884375.1 nt Cloning vector pGHPGWG 8342 bp Cloning vector pGHPGWG QL-ELE-00-004 123 bp View
AM884375.1 nt Cloning vector pGHPGWG 8342 bp Cloning vector pGHPGWG QL-ELE-00-004 123 bp View
AM884376.1 nt Cloning vector pGHPGWY 8342 bp Cloning vector pGHPGWY QL-ELE-00-004 123 bp View
AM884376.1 nt Cloning vector pGHPGWY 8342 bp Cloning vector pGHPGWY QL-ELE-00-004 123 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.