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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB543151.1 nt Gateway binary vector pGWB654 DNA, ... 12219 bp Gateway binary vector pGWB654 QL-ELE-00-001 195 bp View
AB543152.1 nt Gateway binary vector pGWB655 DNA, ... 12218 bp Gateway binary vector pGWB655 QL-ELE-00-001 195 bp View
AB543154.1 nt Gateway binary vector pGWB660 DNA, ... 12255 bp Gateway binary vector pGWB660 QL-ELE-00-001 195 bp View
AB543155.1 nt Gateway binary vector pGWB661 DNA, ... 12254 bp Gateway binary vector pGWB661 QL-ELE-00-001 195 bp View
AB543174.1 nt Gateway binary vector pGWB460 DNA, ... 12399 bp Gateway binary vector pGWB460 QL-ELE-00-001 195 bp View
AB543175.1 nt Gateway binary vector pGWB461 DNA, ... 12398 bp Gateway binary vector pGWB461 QL-ELE-00-001 195 bp View
AB543177.1 nt Gateway binary vector pGWB560 DNA, ... 12720 bp Gateway binary vector pGWB560 QL-ELE-00-001 195 bp View
AB543178.1 nt Gateway binary vector pGWB561 DNA, ... 12719 bp Gateway binary vector pGWB561 QL-ELE-00-001 195 bp View
AB551245.2 nt Binary vector pZH2Bik DNA, complete... 12329 bp Binary vector pZH2Bik QL-ELE-00-001 195 bp View
AB551246.2 nt Binary vector pZH2B-2ox3i DNA, comp... 24552 bp Binary vector pZH2B-2ox3i QL-ELE-00-001 195 bp View
AB602442.1 nt Moss transformation vector pLGZ1 DN... 9789 bp Moss transformation vector pLGZ1 QL-ELE-00-001 195 bp View
AB602443.1 nt Moss transformation vector pLGZ2 DN... 9668 bp Moss transformation vector pLGZ2 QL-ELE-00-001 195 bp View
AB602444.1 nt Moss transformation vector pPIG1b-L... 11539 bp Moss transformation vector pPIG1b-LGXH QL-ELE-00-001 195 bp View
AB608268.1 nt Gateway binary vector pGWB702 DNA, ... 12163 bp Gateway binary vector pGWB702 QL-ELE-00-001 195 bp View
AB608271.1 nt Gateway binary vector pGWB705 DNA, ... 12892 bp Gateway binary vector pGWB705 QL-ELE-00-001 195 bp View
AB608272.1 nt Gateway binary vector pGWB706 DNA, ... 12885 bp Gateway binary vector pGWB706 QL-ELE-00-001 195 bp View
AB608274.1 nt Gateway binary vector pGWB708 DNA, ... 12181 bp Gateway binary vector pGWB708 QL-ELE-00-001 195 bp View
AB608275.1 nt Gateway binary vector pGWB709 DNA, ... 12183 bp Gateway binary vector pGWB709 QL-ELE-00-001 195 bp View
AB608277.1 nt Gateway binary vector pGWB711 DNA, ... 12187 bp Gateway binary vector pGWB711 QL-ELE-00-001 195 bp View
AB608278.1 nt Gateway binary vector pGWB712 DNA, ... 12189 bp Gateway binary vector pGWB712 QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.