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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB472845.1 nt Moss transformation vector pPIG1HCG... 10452 bp Moss transformation vector pPIG1HCG QL-ELE-00-001 195 bp View
AB472846.1 nt Moss transformation vector pPIG1HGC... 10454 bp Moss transformation vector pPIG1HGC QL-ELE-00-001 195 bp View
AB489142.1 nt Plant binary vector pIG121-Hm DNA, ... 17715 bp Plant binary vector pIG121-Hm QL-ELE-00-001 195 bp View
AB537478.1 nt Moss transformation vector pPIG1b-N... 9817 bp Moss transformation vector pPIG1b-NGGII QL-ELE-00-001 195 bp View
AB537479.1 nt Moss transformation vector pPGX1 DN... 13202 bp Moss transformation vector pPGX1 QL-ELE-00-001 195 bp View
AB537480.1 nt Moss transformation vector pPGX2 DN... 13161 bp Moss transformation vector pPGX2 QL-ELE-00-001 195 bp View
AB537481.1 nt Moss transformation vector pPGX6 DN... 12514 bp Moss transformation vector pPGX6 QL-ELE-00-001 195 bp View
AB537482.1 nt Moss transformation vector pPGX8 DN... 13056 bp Moss transformation vector pPGX8 QL-ELE-00-001 195 bp View
AB537973.1 nt Moss transformation vector p35S-lox... 4876 bp Moss transformation vector p35S-loxP-BSD QL-ELE-00-001 195 bp View
AB538231.1 nt Moss transformation vector pPHG-HA3... 9842 bp Moss transformation vector pPHG-HA3 QL-ELE-00-001 195 bp View
AB538232.1 nt Moss transformation vector pPHG-Myc... 9863 bp Moss transformation vector pPHG-Myc3 QL-ELE-00-001 195 bp View
AB538233.1 nt Moss transformation vector pPHG-NMy... 9849 bp Moss transformation vector pPHG-NMyc3 QL-ELE-00-001 195 bp View
AB538275.2 nt Moss transformation vector pTN83 ui... 4363 bp Moss transformation vector pTN83 QL-ELE-00-001 195 bp View
AB540628.1 nt Moss transformation vector p35S-lox... 5167 bp Moss transformation vector p35S-loxP-Zeo QL-ELE-00-001 195 bp View
AB542059.1 nt Moss transformation vector pTN186 a... 2395 bp Moss transformation vector pTN186 QL-ELE-00-001 195 bp View
AB542060.1 nt Cre expression vector pTN75 CRE, ap... 5252 bp Cre expression vector pTN75 QL-ELE-00-001 195 bp View
AB543111.1 nt Gateway binary vector pGWB602 DNA, ... 11541 bp Gateway binary vector pGWB602 QL-ELE-00-001 195 bp View
AB543114.1 nt Gateway binary vector pGWB605 DNA, ... 12270 bp Gateway binary vector pGWB605 QL-ELE-00-001 195 bp View
AB543115.1 nt Gateway binary vector pGWB606 DNA, ... 12263 bp Gateway binary vector pGWB606 QL-ELE-00-001 195 bp View
AB543117.1 nt Gateway binary vector pGWB608 DNA, ... 11559 bp Gateway binary vector pGWB608 QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.