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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB294481.1 nt Gateway binary vector pGWB514 DNA, ... 12126 bp Gateway binary vector pGWB514 QL-ELE-00-001 195 bp View
AB294482.1 nt Gateway binary vector pGWB515 DNA, ... 12128 bp Gateway binary vector pGWB515 QL-ELE-00-001 195 bp View
AB294484.1 nt Gateway binary vector pGWB517 DNA, ... 12177 bp Gateway binary vector pGWB517 QL-ELE-00-001 195 bp View
AB294485.1 nt Gateway binary vector pGWB518 DNA, ... 12179 bp Gateway binary vector pGWB518 QL-ELE-00-001 195 bp View
AB294487.1 nt Gateway binary vector pGWB520 DNA, ... 12408 bp Gateway binary vector pGWB520 QL-ELE-00-001 195 bp View
AB294488.1 nt Gateway binary vector pGWB521 DNA, ... 12413 bp Gateway binary vector pGWB521 QL-ELE-00-001 195 bp View
AB294490.1 nt Gateway binary vector pGWB523 DNA, ... 12684 bp Gateway binary vector pGWB523 QL-ELE-00-001 195 bp View
AB294491.1 nt Gateway binary vector pGWB524 DNA, ... 12686 bp Gateway binary vector pGWB524 QL-ELE-00-001 195 bp View
AB294493.1 nt Gateway binary vector pGWB526 DNA, ... 12039 bp Gateway binary vector pGWB526 QL-ELE-00-001 195 bp View
AB294494.1 nt Gateway binary vector pGWB527 DNA, ... 12041 bp Gateway binary vector pGWB527 QL-ELE-00-001 195 bp View
AB294496.1 nt Gateway binary vector pGWB529 DNA, ... 12552 bp Gateway binary vector pGWB529 QL-ELE-00-001 195 bp View
AB294500.1 nt Gateway binary vector pGWB541 DNA, ... 12723 bp Gateway binary vector pGWB541 QL-ELE-00-001 195 bp View
AB294501.1 nt Gateway binary vector pGWB542 DNA, ... 12725 bp Gateway binary vector pGWB542 QL-ELE-00-001 195 bp View
AB294503.1 nt Gateway binary vector pGWB544 DNA, ... 12723 bp Gateway binary vector pGWB544 QL-ELE-00-001 195 bp View
AB294504.1 nt Gateway binary vector pGWB545 DNA, ... 12725 bp Gateway binary vector pGWB545 QL-ELE-00-001 195 bp View
AB294506.1 nt Gateway binary vector pGWB551 DNA, ... 12723 bp Gateway binary vector pGWB551 QL-ELE-00-001 195 bp View
AB294507.1 nt Gateway binary vector pGWB552 DNA, ... 12722 bp Gateway binary vector pGWB552 QL-ELE-00-001 195 bp View
AB294509.1 nt Gateway binary vector pGWB554 DNA, ... 12684 bp Gateway binary vector pGWB554 QL-ELE-00-001 195 bp View
AB294510.1 nt Gateway binary vector pGWB555 DNA, ... 12683 bp Gateway binary vector pGWB555 QL-ELE-00-001 195 bp View
AB472844.1 nt Moss transformation vector pPIG1HG ... 9735 bp Moss transformation vector pPIG1HG QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.