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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR797710.1 nt Expression vector pBI221-H2B-mCherr... 5697 bp Expression vector pBI221-H2B-mCherry QL-ELE-00-001 195 bp View
OR797711.1 nt Binary vector pCAMBIA 1301-GFP-alph... 14209 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin QL-ELE-00-001 195 bp View
OR797712.1 nt Binary vector pCAMBIA 1301-GFP-alph... 16020 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin-mcherry QL-ELE-00-001 195 bp View
OR797712.1 nt Binary vector pCAMBIA 1301-GFP-alph... 16020 bp Binary vector pCAMBIA 1301-GFP-alpha tubulin-mcherry QL-ELE-00-001 195 bp View
OR810744.1 nt Expression vector pBI221-GFP, compl... 5262 bp Expression vector pBI221-GFP QL-ELE-00-001 195 bp View
PA263415.1 emblrelpat JP 2021078362-A/4: Method for intro... 11588 bp synthetic construct QL-ELE-00-001 195 bp View
PA264904.1 emblrelpat WO 2021095802-A/4: Method for intro... 11588 bp synthetic construct QL-ELE-00-001 195 bp View
PA270784.1 emblrelpat WO 2021132669-A/1: Method for inhib... 345 bp Cauliflower mosaic virus QL-ELE-00-001 195 bp View
PA552555.1 emblrelpat WO 2022145427-A/14: Method for prod... 1057 bp synthetic construct QL-ELE-00-001 195 bp View
PA553696.1 emblrelpat JP 2022114271-A/5: Plant for produc... 835 bp Cauliflower mosaic virus QL-ELE-00-001 195 bp View
PP001171.1 nt Binary vector pEG100-SW, complete s... 11151 bp Binary vector pEG100-SW QL-ELE-00-001 195 bp View
U28417.1 nt Cloning vector p35S-GFP, complete s... 4518 bp Cloning vector p35S-GFP QL-ELE-00-001 195 bp View
V00141.1 nt Cauliflower mosaic virus genome. 8024 bp Cauliflower mosaic virus QL-ELE-00-001 195 bp View
X53860.1 nt Cauliflower mosaic virus (CaMV) gen... 2283 bp Cauliflower mosaic virus QL-ELE-00-001 195 bp View
X79465.1 nt Cauliflower Mosaic Virus strain B29... 8031 bp Cauliflower mosaic virus QL-ELE-00-001 195 bp View
X84105.1 nt Artificial sequences T-DNA of binai... 5288 bp synthetic construct QL-ELE-00-001 195 bp View
Y18556.1 nt Cloning vector pSLJ8313, T-DNA region 22574 bp Cloning vector pSLJ8313 QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.