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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB209952.1 emblreltgn Glycine max transgenic cp4epsps gen... 2457 bp Glycine max QL-ELE-00-001 195 bp View
AB267704.2 nt Moss transformation vector pTN80 DN... 2104 bp Moss transformation vector pTN80 QL-ELE-00-001 195 bp View
AB267705.1 nt Moss transformation vector pTN86 DN... 2383 bp Moss transformation vector pTN86 QL-ELE-00-001 195 bp View
AB267706.2 nt Moss transformation vector pTN182 D... 2500 bp Moss transformation vector pTN182 QL-ELE-00-001 195 bp View
AB267707.1 nt Moss transformation vector pTN85 DN... 4325 bp Moss transformation vector pTN85 QL-ELE-00-001 195 bp View
AB289765.1 nt Gateway binary vector pGWB2 DNA, co... 17236 bp Gateway binary vector pGWB2 QL-ELE-00-001 195 bp View
AB289768.2 nt Gateway binary vector pGWB5 DNA, co... 17961 bp Gateway binary vector pGWB5 QL-ELE-00-001 195 bp View
AB289769.1 nt Gateway binary vector pGWB6 DNA, co... 17958 bp Gateway binary vector pGWB6 QL-ELE-00-001 195 bp View
AB289771.1 nt Gateway binary vector pGWB8 DNA, co... 17254 bp Gateway binary vector pGWB8 QL-ELE-00-001 195 bp View
AB289772.1 nt Gateway binary vector pGWB9 DNA, co... 17256 bp Gateway binary vector pGWB9 QL-ELE-00-001 195 bp View
AB289774.1 nt Gateway binary vector pGWB11 DNA, c... 17260 bp Gateway binary vector pGWB11 QL-ELE-00-001 195 bp View
AB289775.1 nt Gateway binary vector pGWB12 DNA, c... 17262 bp Gateway binary vector pGWB12 QL-ELE-00-001 195 bp View
AB289777.1 nt Gateway binary vector pGWB14 DNA, c... 17356 bp Gateway binary vector pGWB14 QL-ELE-00-001 195 bp View
AB289778.1 nt Gateway binary vector pGWB15 DNA, c... 17358 bp Gateway binary vector pGWB15 QL-ELE-00-001 195 bp View
AB289780.1 nt Gateway binary vector pGWB17 DNA, c... 17407 bp Gateway binary vector pGWB17 QL-ELE-00-001 195 bp View
AB289781.1 nt Gateway binary vector pGWB18 DNA, c... 17409 bp Gateway binary vector pGWB18 QL-ELE-00-001 195 bp View
AB289783.1 nt Gateway binary vector pGWB20 DNA, c... 17638 bp Gateway binary vector pGWB20 QL-ELE-00-001 195 bp View
AB289784.1 nt Gateway binary vector pGWB21 DNA, c... 17643 bp Gateway binary vector pGWB21 QL-ELE-00-001 195 bp View
AB289786.1 nt Gateway binary vector pGWB23 DNA, c... 17914 bp Gateway binary vector pGWB23 QL-ELE-00-001 195 bp View
AB289787.1 nt Gateway binary vector pGWB24 DNA, c... 17916 bp Gateway binary vector pGWB24 QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.