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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF489904.1 nt Cloning vector pHellsgate 8, comple... 17485 bp Cloning vector pHellsgate 8 QL-ELE-00-001 195 bp View
AF502128.1 nt Transient expression vector pBI221,... 5667 bp Transient expression vector pBI221 QL-ELE-00-001 195 bp View
AJ007625.1 nt Cauliflower mosaic virus 35S promot... 485 bp Cauliflower mosaic virus QL-ELE-00-001 235 bp View
AJ251014.1 nt Transformation binary vector pBAR-3... 3236 bp Transformation binary vector pBAR-35S QL-ELE-00-001 195 bp View
AJ298137.1 nt Arabidopsis thaliana eIF-4A1 gene f... 11509 bp Arabidopsis thaliana QL-ELE-00-001 195 bp View
AJ308514.1 nt Synthetic construct for E35S promot... 390 bp synthetic construct QL-ELE-00-001 194 bp View
AJ311872.1 nt Cloning vector pHANNIBAL 5824 bp Cloning vector pHANNIBAL QL-ELE-00-001 195 bp View
AJ311873.1 nt Cloning vector pKANNIBAL 6063 bp Cloning vector pKANNIBAL QL-ELE-00-001 195 bp View
AJ311874.1 nt Cloning vector pHELLSGATE 18691 bp Cloning vector pHELLSGATE QL-ELE-00-001 195 bp View
AJ315956.1 nt Binary Cloning vector pAC161 10828 bp Binary cloning vector pAC161 QL-ELE-00-001 195 bp View
AJ414109.1 nt Binary vector pGV4126 DNA, region b... 5341 bp Binary vector pGV4126 QL-ELE-00-001 195 bp View
AJ414110.1 nt Binary vector pGV4128 DNA, region b... 5439 bp Binary vector pGV4128 QL-ELE-00-001 195 bp View
AJ414111.1 nt Binary vector pGV4223 DNA, region b... 5582 bp Binary vector pGV4223 QL-ELE-00-001 195 bp View
AJ414112.1 nt Cloning vector pGV1025 DNA, complet... 5667 bp Cloning vector pGV1025 QL-ELE-00-001 195 bp View
AJ414113.1 nt Cloning vector pGV4112 DNA, complet... 3792 bp Cloning vector pGV4112 QL-ELE-00-001 195 bp View
AJ537513.1 nt Synthetic construct plasmid pAC106 10877 bp synthetic construct QL-ELE-00-001 195 bp View
AJ537513.1 nt Synthetic construct plasmid pAC106 10877 bp synthetic construct QL-ELE-00-001 195 bp View
AM884374.1 nt Cloning vector pGHPGWC 8342 bp Cloning vector pGHPGWC QL-ELE-00-001 195 bp View
AM884375.1 nt Cloning vector pGHPGWG 8342 bp Cloning vector pGHPGWG QL-ELE-00-001 195 bp View
AM884376.1 nt Cloning vector pGHPGWY 8342 bp Cloning vector pGHPGWY QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.