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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB830555.1 nt Gateway vector pB4GWcY DNA, complet... 11889 bp Gateway vector pB4GWcY QL-ELE-00-001 195 bp View
AB830556.1 nt Gateway vector pB4GWnC DNA, complet... 12213 bp Gateway vector pB4GWnC QL-ELE-00-001 195 bp View
AB830557.1 nt Gateway vector pB4GWnG DNA, complet... 12213 bp Gateway vector pB4GWnG QL-ELE-00-001 195 bp View
AB830558.1 nt Gateway vector pB4GWnR DNA, complet... 12186 bp Gateway vector pB4GWnR QL-ELE-00-001 195 bp View
AB830559.1 nt Gateway vector pB4GWnY DNA, complet... 12213 bp Gateway vector pB4GWnY QL-ELE-00-001 195 bp View
AB830560.1 nt Gateway vector pB5cCGGW DNA, comple... 12222 bp Gateway vector pB5cCGGW QL-ELE-00-001 195 bp View
AB830561.1 nt Gateway vector pB5cRGW DNA, complet... 12266 bp Gateway vector pB5cRGW QL-ELE-00-001 195 bp View
AB830562.1 nt Gateway vector pB5cYGW DNA, complet... 12222 bp Gateway vector pB5cYGW QL-ELE-00-001 195 bp View
AB830563.1 nt Gateway vector pB5GWcCG DNA, comple... 12207 bp Gateway vector pB5GWcCG QL-ELE-00-001 195 bp View
AB830564.1 nt Gateway vector pB5GWcR DNA, complet... 12249 bp Gateway vector pB5GWcR QL-ELE-00-001 195 bp View
AB830565.1 nt Gateway vector pB5GWcY DNA, complet... 12207 bp Gateway vector pB5GWcY QL-ELE-00-001 195 bp View
AB830566.1 nt Gateway vector pB5GWnC DNA, complet... 12531 bp Gateway vector pB5GWnC QL-ELE-00-001 195 bp View
AB830567.1 nt Gateway vector pB5GWnG DNA, complet... 12531 bp Gateway vector pB5GWnG QL-ELE-00-001 195 bp View
AB830568.1 nt Gateway vector pB5GWnR DNA, complet... 12504 bp Gateway vector pB5GWnR QL-ELE-00-001 195 bp View
AB830569.1 nt Gateway vector pB5GWnY DNA, complet... 12531 bp Gateway vector pB5GWnY QL-ELE-00-001 195 bp View
AB830570.1 nt Gateway vector pB5nCGW DNA, complet... 12546 bp Gateway vector pB5nCGW QL-ELE-00-001 195 bp View
AB830571.1 nt Gateway vector pB5nGGW DNA, complet... 12546 bp Gateway vector pB5nGGW QL-ELE-00-001 195 bp View
AB830572.1 nt Gateway vector pB5nRGW DNA, complet... 12519 bp Gateway vector pB5nRGW QL-ELE-00-001 195 bp View
AB830573.1 nt Gateway vector pB5nYGW DNA, complet... 12546 bp Gateway vector pB5nYGW QL-ELE-00-001 195 bp View
AB863157.1 nt Cauliflower mosaic virus DNA, compl... 8022 bp Cauliflower mosaic virus QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.