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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB758445.1 nt Moss transformation vector pTFH22.4... 6567 bp Moss transformation vector pTFH22.4 QL-ELE-00-001 195 bp View
AB830536.1 nt Gateway vector pcCGGW DNA, complete... 6192 bp Gateway vector pcCGGW QL-ELE-00-001 195 bp View
AB830537.1 nt Gateway vector pcRGW DNA, complete ... 6237 bp Gateway vector pcRGW QL-ELE-00-001 195 bp View
AB830538.1 nt Gateway vector pnCGW DNA, complete ... 6516 bp Gateway vector pnCGW QL-ELE-00-001 195 bp View
AB830539.1 nt Gateway vector pnGGW DNA, complete ... 6516 bp Gateway vector pnGGW QL-ELE-00-001 195 bp View
AB830540.1 nt Gateway vector pnRGW DNA, complete ... 6489 bp Gateway vector pnRGW QL-ELE-00-001 195 bp View
AB830541.1 nt Gateway vector pGWcCG DNA, complete... 6211 bp Gateway vector pGWcCG QL-ELE-00-001 195 bp View
AB830542.1 nt Gateway vector pGWcR DNA, complete ... 6253 bp Gateway vector pGWcR QL-ELE-00-001 195 bp View
AB830543.1 nt Gateway vector pGWnC DNA, complete ... 6535 bp Gateway vector pGWnC QL-ELE-00-001 195 bp View
AB830544.1 nt Gateway vector pGWnG DNA, complete ... 6535 bp Gateway vector pGWnG QL-ELE-00-001 195 bp View
AB830545.1 nt Gateway vector pGWnR DNA, complete ... 6508 bp Gateway vector pGWnR QL-ELE-00-001 195 bp View
AB830546.1 nt Gateway vector pB4cCGGW DNA, comple... 11904 bp Gateway vector pB4cCGGW QL-ELE-00-001 195 bp View
AB830547.1 nt Gateway vector pB4cRGW DNA, complet... 11948 bp Gateway vector pB4cRGW QL-ELE-00-001 195 bp View
AB830548.1 nt Gateway vector pB4cYGW DNA, complet... 11904 bp Gateway vector pB4cYGW QL-ELE-00-001 195 bp View
AB830549.1 nt Gateway vector pB4nCGW DNA, complet... 12228 bp Gateway vector pB4nCGW QL-ELE-00-001 195 bp View
AB830550.1 nt Gateway vector pB4nGGW DNA, complet... 12228 bp Gateway vector pB4nGGW QL-ELE-00-001 195 bp View
AB830551.1 nt Gateway vector pB4nRGW DNA, complet... 12201 bp Gateway vector pB4nRGW QL-ELE-00-001 195 bp View
AB830552.1 nt Gateway vector pB4nYGW DNA, complet... 12228 bp Gateway vector pB4nYGW QL-ELE-00-001 195 bp View
AB830553.1 nt Gateway vector pB4GWcCG DNA, comple... 11889 bp Gateway vector pB4GWcCG QL-ELE-00-001 195 bp View
AB830554.1 nt Gateway vector pB4GWcR DNA, complet... 11931 bp Gateway vector pB4GWcR QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.