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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB626684.1 nt Gateway vector pUGW42 DNA, complete... 6711 bp Gateway vector pUGW42 QL-ELE-00-001 195 bp View
AB626685.1 nt Gateway vector pUGW44 DNA, complete... 6727 bp Gateway vector pUGW44 QL-ELE-00-001 195 bp View
AB626686.1 nt Gateway vector pUGW45 DNA, complete... 6711 bp Gateway vector pUGW45 QL-ELE-00-001 195 bp View
AB626687.1 nt Gateway vector pUGW51 DNA, complete... 6727 bp Gateway vector pUGW51 QL-ELE-00-001 195 bp View
AB626688.1 nt Gateway vector pUGW52 DNA, complete... 6708 bp Gateway vector pUGW52 QL-ELE-00-001 195 bp View
AB626689.1 nt Gateway vector pUGW54 DNA, complete... 6688 bp Gateway vector pUGW54 QL-ELE-00-001 195 bp View
AB626690.1 nt Gateway vector pUGW55 DNA, complete... 6669 bp Gateway vector pUGW55 QL-ELE-00-001 195 bp View
AB626691.1 nt Gateway vector pUGW60 DNA, complete... 6724 bp Gateway vector pUGW60 QL-ELE-00-001 195 bp View
AB626692.1 nt Gateway vector pUGW61 DNA, complete... 6705 bp Gateway vector pUGW61 QL-ELE-00-001 195 bp View
AB626693.1 nt Gateway vector pGWnY DNA, complete ... 6535 bp Gateway vector pGWnY QL-ELE-00-001 195 bp View
AB626694.1 nt Gateway vector pnYGW DNA, complete ... 6516 bp Gateway vector pnYGW QL-ELE-00-001 195 bp View
AB626695.1 nt Gateway vector pGWcY DNA, complete ... 6205 bp Gateway vector pGWcY QL-ELE-00-001 195 bp View
AB626696.1 nt Gateway vector pcYGW DNA, complete ... 6192 bp Gateway vector pcYGW QL-ELE-00-001 195 bp View
AB697057.1 nt Moss transformation vector pGUS-NPT... 7114 bp Moss transformation vector pGUS-NPTII-2 QL-ELE-00-001 195 bp View
AB697058.1 nt Moss transformation vector pCTRN-NP... 6023 bp Moss transformation vector pCTRN-NPTII 2 QL-ELE-00-001 195 bp View
AB720111.1 nt Moss transformation vector pTN82 DN... 2796 bp Moss transformation vector pTN82 QL-ELE-00-001 195 bp View
AB736152.1 nt Cloning vector pTY262 DNA, complete... 5078 bp Cloning vector pTY262 QL-ELE-00-001 195 bp View
AB752377.1 nt Gateway binary vector pGWB80 DNA, c... 17897 bp Gateway binary vector pGWB80 QL-ELE-00-001 195 bp View
AB752386.1 nt Gateway recycling vector pRED56-MD8... 8573 bp Gateway recycling vector pRED56-MD8-P35S QL-ELE-00-001 195 bp View
AB758445.1 nt Moss transformation vector pTFH22.4... 6567 bp Moss transformation vector pTFH22.4 QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.