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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1572 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AP019391.1 nt Gateway binary vector pB4cVGW DNA, ... 11774 bp Gateway binary vector pB4cVGW QL-CON-00-014 163 bp View
AP019392.1 nt Gateway binary vector pB4GWnV3 DNA,... 12315 bp Gateway binary vector pB4GWnV3 QL-CON-00-014 163 bp View
AP019393.1 nt Gateway binary vector pB4GWcV DNA, ... 11772 bp Gateway binary vector pB4GWcV QL-CON-00-014 163 bp View
AR074365.1 emblrelpat Sequence 1 from patent US 5952546. 15397 bp unidentified QL-CON-00-014 171 bp View
AR074365.1 emblrelpat Sequence 1 from patent US 5952546. 15397 bp unidentified QL-CON-00-014 176 bp View
AR575402.1 emblrelpat Sequence 4 from patent US 6770799. 14446 bp unidentified QL-CON-00-014 143 bp View
AR707144.1 emblrelpat Sequence 13 from patent US 6933146. 18691 bp unidentified QL-CON-00-014 170 bp View
AR707154.1 emblrelpat Sequence 23 from patent US 6933146. 17862 bp unidentified QL-CON-00-014 170 bp View
AR707155.1 emblrelpat Sequence 24 from patent US 6933146. 17476 bp unidentified QL-CON-00-014 170 bp View
AR707156.1 emblrelpat Sequence 25 from patent US 6933146. 17458 bp unidentified QL-CON-00-014 170 bp View
AR707157.1 emblrelpat Sequence 26 from patent US 6933146. 17681 bp unidentified QL-CON-00-014 170 bp View
AX052541.1 emblrelpat Sequence 3 from Patent WO0071668. 14194 bp synthetic construct QL-CON-00-014 151 bp View
AX063413.1 emblrelpat Sequence 5 from Patent WO0100833. 7599 bp synthetic construct QL-CON-00-014 152 bp View
AX092998.1 emblrelpat Sequence 3 from Patent WO0118192. 5971 bp synthetic construct QL-CON-00-014 163 bp View
AX092999.1 emblrelpat Sequence 4 from Patent WO0118192. 6016 bp synthetic construct QL-CON-00-014 163 bp View
AX093000.1 emblrelpat Sequence 5 from Patent WO0118192. 6017 bp synthetic construct QL-CON-00-014 164 bp View
AX093001.1 emblrelpat Sequence 6 from Patent WO0118192. 6016 bp synthetic construct QL-CON-00-014 163 bp View
AX093002.1 emblrelpat Sequence 7 from Patent WO0118192. 6017 bp synthetic construct QL-CON-00-014 164 bp View
AX093003.1 emblrelpat Sequence 8 from Patent WO0118192. 6767 bp synthetic construct QL-CON-00-014 164 bp View
AX093004.1 emblrelpat Sequence 9 from Patent WO0118192. 6767 bp synthetic construct QL-CON-00-014 164 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.