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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Match details

Record ID: AR074365.1
Database: emblrelpat Go to original record
Description: Sequence 1 from patent US 5952546.
Taxon: unidentified
Original size: 15397 bp
Patents: US5952546 (lens, espacenet)

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Method: QL-CON-00-014 Go to GMOMETHODS record
View in JRC GMO-Matrix
Description:Qualitative PCR method for detection of the junction between the nos promoter and the neomycin phosphotransferase II gene
Target:P-nos-nptII

View other 1572 matches for this method

Predicted amplification details:
Mismatches Gaps From To Strand Amplicon size
0 0 6054 6229 + 176 bp
Amplicon: 176 bp 
1     ttcccctcgg tatccaatta gagtctcata ttcactctca atccaaataa
51    tctggatctg atcaagagac aggatgagga tcgtttcgca tgattgaaca
101   agatggattg cacgcaggtt ctccggccgc ttgggtggag aggctattcg
151   gctatgactg ggcacaacag acaatc

View other 2 matches with an identical amplicon

Primers and probe alignment:
Primer/Probe % Identity Length Mismatches Gaps From To Score
primerA 100.0 23 bp 0 0 1 23 2.18e-10
primerB 100.0 22 bp 0 0 176 155 7.37e-10
probe 100.0 25 bp 0 0 153 129 1.88e-11

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.