Match details
| Record ID: |
AR184317.1 |
| Database: |
emblrelpat |
Go to original record |
| Description: |
Sequence 9 from patent US 6342660. |
| Taxon: |
unidentified |
| Original size: |
7378 bp |
| Patents: |
US6342660 (lens, espacenet)
|
View other 32 matches for this record
| Method: |
QL-CON-00-003 |
Go to GMOMETHODS record |
|
View in JRC GMO-Matrix
|
|
| Description: | Qualitative PCR method for detection of the junction between the intron 2 from the maize adh1 gene and the pat gene(ISO/FDIS 21569:2005). |
| Target: | IVS2-pat |
View other 11 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
4152 |
4340 |
+ |
189 bp |
|
1 ctgggaggcc aaggtatcta atcagccatc ccatttgtga tctttgtcag
51 tagatatgat acaacaactc gcggttgact tgcgccttct tggcggctta
101 tctgtctcag gggcagactc ccgtgttccc tcggatctcg acatgtctcc
151 ggagaggaga ccagttgaga ttaggccagc tacagcagc
View other 11 matches with an identical amplicon
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
22 bp |
0 |
0 |
1 |
22 |
7.94e-10 |
| primerB |
100.0 |
22 bp |
0 |
0 |
189 |
168 |
7.94e-10 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
