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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 22 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CQ867566.1 emblrelpat Sequence 5 from Patent WO2004074492. 3778 bp synthetic construct QT-EVE-BV-001 108 bp View
CQ867567.1 emblrelpat Sequence 6 from Patent WO2004074492. 3706 bp synthetic construct QT-EVE-BV-001 108 bp View
CQ867574.1 emblrelpat Sequence 13 from Patent WO2004074492. 664 bp synthetic construct QT-EVE-BV-001 108 bp View
CQ867578.1 emblrelpat Sequence 17 from Patent WO2004074492. 1042 bp synthetic construct QT-EVE-BV-001 108 bp View
DD417674.1 emblrelpat Glyphosate Tolerant Sugar Beet. 3778 bp synthetic construct QT-EVE-BV-001 108 bp View
DD417675.1 emblrelpat Glyphosate Tolerant Sugar Beet. 3706 bp synthetic construct QT-EVE-BV-001 108 bp View
DD417682.1 emblrelpat Glyphosate Tolerant Sugar Beet. 664 bp synthetic construct QT-EVE-BV-001 108 bp View
DD417686.1 emblrelpat Glyphosate Tolerant Sugar Beet. 1042 bp synthetic construct QT-EVE-BV-001 108 bp View
EA442323.1 emblrelpat Sequence 5 from patent US 7335816. 3778 bp unidentified QT-EVE-BV-001 108 bp View
EA442324.1 emblrelpat Sequence 6 from patent US 7335816. 3706 bp unidentified QT-EVE-BV-001 108 bp View
EA442331.1 emblrelpat Sequence 13 from patent US 7335816. 664 bp unidentified QT-EVE-BV-001 108 bp View
EA442335.1 emblrelpat Sequence 17 from patent US 7335816. 1042 bp unidentified QT-EVE-BV-001 108 bp View
MP761920.1 emblrelpat Sequence 83 from Patent WO2020169178. 3706 bp synthetic construct QT-EVE-BV-001 108 bp View
MP761926.1 emblrelpat Sequence 89 from Patent WO2020169178. 1042 bp synthetic construct QT-EVE-BV-001 108 bp View
MP955614.1 emblrelpat Sequence 83 from Patent EP3696188. 3706 bp synthetic construct QT-EVE-BV-001 108 bp View
MP955620.1 emblrelpat Sequence 89 from Patent EP3696188. 1042 bp synthetic construct QT-EVE-BV-001 108 bp View
MV668282.1 emblrelpat Sequence 83 from patent US 10767191. 3706 bp unidentified QT-EVE-BV-001 108 bp View
MV668288.1 emblrelpat Sequence 89 from patent US 10767191. 1042 bp unidentified QT-EVE-BV-001 108 bp View
NRN_CQ867566 nrnl1 Sequence 5 from Patent WO2004074492... 3778 bp unidentified QT-EVE-BV-001 108 bp View
NRN_CQ867567 nrnl1 Sequence 6 from Patent WO2004074492... 3706 bp unidentified QT-EVE-BV-001 108 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.