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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 236 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
A59871.1 emblrelpat Sequence 3 from Patent WO9706269. 1667 bp unidentified QL-CON-00-008 88 bp View
AR143709.1 emblrelpat Sequence 1 from patent US 6204436. 8012 bp unidentified QL-CON-00-008 88 bp View
AR143712.1 emblrelpat Sequence 4 from patent US 6204436. 8798 bp unidentified QL-CON-00-008 88 bp View
AR143713.1 emblrelpat Sequence 5 from patent US 6204436. 8418 bp unidentified QL-CON-00-008 88 bp View
AR225313.1 emblrelpat Sequence 5 from patent US 6441277. 10846 bp unidentified QL-CON-00-008 88 bp View
AR225314.1 emblrelpat Sequence 6 from patent US 6441277. 10900 bp unidentified QL-CON-00-008 88 bp View
AR438378.1 emblrelpat Sequence 5 from patent US 6663906. 10846 bp unidentified QL-CON-00-008 88 bp View
AR438379.1 emblrelpat Sequence 6 from patent US 6663906. 10900 bp unidentified QL-CON-00-008 88 bp View
AR491631.1 emblrelpat Sequence 5 from patent US 6716474. 10846 bp unidentified QL-CON-00-008 88 bp View
AR491632.1 emblrelpat Sequence 6 from patent US 6716474. 10900 bp unidentified QL-CON-00-008 88 bp View
BD008400.1 emblrelpat JP 2001503280-A/1: Glyphosate resis... 8012 bp unidentified QL-CON-00-008 88 bp View
BD008403.1 emblrelpat JP 2001503280-A/4: Glyphosate resis... 8798 bp unidentified QL-CON-00-008 88 bp View
BD008404.1 emblrelpat JP 2001503280-A/5: Glyphosate resis... 8418 bp unidentified QL-CON-00-008 88 bp View
BD062173.1 emblrelpat JP 2001520522-A/4: Expression of fr... 10847 bp unidentified QL-CON-00-008 88 bp View
BD062174.1 emblrelpat JP 2001520522-A/5: Expression of fr... 10901 bp unidentified QL-CON-00-008 88 bp View
CQ867566.1 emblrelpat Sequence 5 from Patent WO2004074492. 3778 bp synthetic construct QL-CON-00-008 88 bp View
CQ867567.1 emblrelpat Sequence 6 from Patent WO2004074492. 3706 bp synthetic construct QL-CON-00-008 88 bp View
CS421030.1 emblrelpat Sequence 1 from Patent WO2006099249. 8590 bp synthetic construct QL-CON-00-008 88 bp View
CS421031.1 emblrelpat Sequence 2 from Patent WO2006099249. 7794 bp synthetic construct QL-CON-00-008 88 bp View
DD417674.1 emblrelpat Glyphosate Tolerant Sugar Beet. 3778 bp synthetic construct QL-CON-00-008 88 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.