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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1578 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AX696001.1 emblrelpat Sequence 13 from Patent WO03008596. 6080 bp synthetic construct QT-ELE-00-002 68 bp View
AX696002.1 emblrelpat Sequence 14 from Patent WO03008596. 8441 bp synthetic construct QT-ELE-00-002 68 bp View
AX696003.1 emblrelpat Sequence 15 from Patent WO03008596. 8384 bp synthetic construct QT-ELE-00-002 68 bp View
AX840288.1 emblrelpat Sequence 10 from Patent WO03078614. 7545 bp synthetic construct QT-ELE-00-002 68 bp View
AX840289.1 emblrelpat Sequence 11 from Patent WO03078614. 11643 bp synthetic construct QT-ELE-00-002 68 bp View
AY562534.1 nt Binary Vector pORE_E1, complete seq... 7785 bp Binary vector pORE_E1 QT-ELE-00-002 68 bp View
AY562536.1 nt Binary Vector pORE_E3, complete seq... 7786 bp Binary vector pORE_E3 QT-ELE-00-002 68 bp View
AY562539.1 nt Binary Vector pORE_O1, complete seq... 7287 bp Binary vector pORE_O1 QT-ELE-00-002 68 bp View
AY562541.1 nt Binary Vector pORE_O3, complete seq... 6312 bp Binary vector pORE_O3 QT-ELE-00-002 68 bp View
AY562543.1 nt Binary Vector pORE_O5, complete seq... 6496 bp Binary vector pORE_O5 QT-ELE-00-002 68 bp View
AY562548.1 nt Binary Vector pORE_R5, complete seq... 7221 bp Binary vector pORE_R5 QT-ELE-00-002 68 bp View
BD014472.1 emblrelpat JP 2001136983-A/14: Transgenic corn... 892 bp synthetic construct QT-ELE-00-002 68 bp View
BD014476.1 emblrelpat JP 2001136983-A/18: Transgenic corn... 601 bp synthetic construct QT-ELE-00-002 68 bp View
BD014493.1 emblrelpat JP 2001136983-A/35: Transgenic corn... 820 bp synthetic construct QT-ELE-00-002 68 bp View
BD105559.1 emblrelpat Method of constructing transgenic p... 4186 bp unidentified QT-ELE-00-002 68 bp View
BD194459.1 emblrelpat JP 2002509710-A/8: Chimeric insecti... 5465 bp synthetic construct QT-ELE-00-002 68 bp View
BD247867.1 emblrelpat JP 2002540787-A/7: Transgenic plant... 13737 bp synthetic construct QT-ELE-00-002 68 bp View
BD378188.1 emblrelpat Methods and kits for identifying e... 3983 bp synthetic construct QT-ELE-00-002 68 bp View
CQ769036.1 emblrelpat Sequence 14 from Patent WO2004007733. 10817 bp synthetic construct QT-ELE-00-002 68 bp View
CQ769037.1 emblrelpat Sequence 15 from Patent WO2004007733. 10986 bp synthetic construct QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.