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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 174 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MO887849.1 emblrelpat Sequence 8 from patent US 10562944. 1848 bp unidentified QL-ELE-00-016 74 bp View
MO940329.1 emblrelpat Sequence 9 from patent US 10584391. 10119 bp unidentified QL-ELE-00-016 74 bp View
MO940330.1 emblrelpat Sequence 10 from patent US 10584391. 12640 bp unidentified QL-ELE-00-016 74 bp View
MV120457.1 emblrelpat Sequence 8 from patent US 10633669. 1848 bp unidentified QL-ELE-00-016 74 bp View
MV152412.1 emblrelpat Sequence 8 from patent US 10655140. 1848 bp unidentified QL-ELE-00-016 74 bp View
NRN_AR110596 nrnl1 Sequence 3 from patent US 6114608. ... 1851 bp unidentified QL-ELE-00-016 74 bp View
NRN_AR110602 nrnl1 Sequence 9 from patent US 6114608. ... 7378 bp unidentified QL-ELE-00-016 74 bp View
NRN_AR127585 nrnl1 Sequence 3 from patent US 6180774. ... 3531 bp unidentified QL-ELE-00-016 74 bp View
NRN_AR127687 nrnl1 Sequence 105 from patent US 6180774... 3484 bp unidentified QL-ELE-00-016 74 bp View
NRN_AR656168 nrnl1 Sequence 15 from patent US 6893826.... 4973 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX044385 nrnl1 Sequence 1 from Patent WO0066755. ... 2062 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX044386 nrnl1 Sequence 2 from Patent WO0066755. ... 2062 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX044390 nrnl1 Sequence 6 from Patent WO0066755. ... 2788 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX044391 nrnl1 Sequence 7 from Patent WO0066755. ... 2692 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX044392 nrnl1 Sequence 8 from Patent WO0066755. ... 2436 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX044393 nrnl1 Sequence 9 from Patent WO0066755. ... 2788 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX044394 nrnl1 Sequence 10 from Patent WO0066755. ... 2692 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX044395 nrnl1 Sequence 11 from Patent WO0066755. ... 2436 bp unidentified QL-ELE-00-016 74 bp View
NRN_AX441374 nrnl1 Sequence 5 from Patent EP1209237. ... 1845 bp unidentified QL-ELE-00-016 74 bp View
NRN_CS803547 nrnl1 Sequence 16 from Patent WO200709127... 4248 bp unidentified QL-ELE-00-016 74 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.