Match details
Record ID:
NRN_AR110596
Database:
nrnl1
Go to original record
Description:
Sequence 3 from patent US 6114608. Sequence 3 from patent US 6229075. Sequence 3 from patent US 6232533. Sequence 3 from patent US 6232534. Sequence 3 from patent US 6342660. Sequence 3 from patent US 6399860. Sequence 3 from patent US 6573438.
Taxon:
unidentified
Original size:
1851 bp
Patents:
US6114608 (lens , espacenet )
US6229075 (lens , espacenet )
US6229075 (lens , espacenet )
US6232533 (lens , espacenet )
US6232533 (lens , espacenet )
US6232534 (lens , espacenet )
US6232534 (lens , espacenet )
US6342660 (lens , espacenet )
US6342660 (lens , espacenet )
US6399860 (lens , espacenet )
US6399860 (lens , espacenet )
US6573438 (lens , espacenet )
US6573438 (lens , espacenet )
View other 1 match for this record
View other 196 matches for this method
Predicted amplification details:
Mismatches
Gaps
From
To
Strand
Amplicon size
0
0
383
456
+
74 bp
1 gaggaaatgc gtattcaatt caacgacatg aacagcgcct tgaccacagc
51 tatcccattg ttcgcagtcc agaa
View other 173 matches with an identical amplicon
Primers and probe alignment:
Primer/Probe
% Identity
Length
Mismatches
Gaps
From
To
Score
primerA
100.0
24 bp
0
0
1
24
2.75e-11
primerB
100.0
20 bp
0
0
74
55
3.63e-09
probe
100.0
25 bp
0
0
26
50
8.04e-12
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.